Fwd: PNAS Latest Articles for April 4, 2018

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Date: Thu, Apr 5, 2018 at 12:27 AM
Subject: PNAS Latest Articles for April 4, 2018
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Latest Articles for April 4, 2018 Letters (Online Only) Does selecting ligand shape γδ-TCR repertoire? Yueh-hsiu Chien Reply to Chien: Clarification of the effect of ligand on γδ-TCR repertoire selection Shawn P. Fahl and David L. Wiest Commentaries Physiological constraints on marine mammal body size J. A. Goldbogen The labyrinth of human variation Erik Trinkaus Good news and bad news of blue carbon Christopher L. Sabine Physical Sciences Applied Mathematics Multiscale mixing patterns in networks  Leto Peel, Jean-Charles Delvenne, and Renaud Lambiotte Applied Physical Sciences Thermodynamic limits of energy harvesting from outgoing thermal radiation Siddharth Buddhiraju, Parthiban Santhanam, and Shanhui Fan Dramatic pressure-sensitive ion conduction in conical nanopores Laetitia Jubin, Anthony Poggioli, Alessandro Siria, and Lydéric Bocquet Biophysics and Computational Biology Cell contraction induces long-ranged stress stiffening in the extracellular matrix Yu Long Han, Pierre Ronceray, Guoqiang Xu, Andrea Malandrino, Roger D. Kamm, Martin Lenz, Chase P. Broedersz, and Ming Guo Roll maneuvers are essential for active reorientation of Caenorhabditis elegans in 3D media Alejandro Bilbao, Amar K. Patel, Mizanur Rahman, Siva A. Vanapalli, and Jerzy Blawzdziewicz Accurate and sensitive quantification of protein-DNA binding affinity  Chaitanya Rastogi, H. Tomas Rube, Judith F. Kribelbauer, Justin Crocker, Ryan E. Loker, Gabriella D. Martini, Oleg Laptenko, William A. Freed-Pastor, Carol Prives, David L. Stern, Richard S. Mann, and Harmen J. Bussemaker Robust, linear correlations between growth rates and β-lactam–mediated lysis rates Anna J. Lee, Shangying Wang, Hannah R. Meredith, Bihan Zhuang, Zhuojun Dai, and Lingchong You Structural dynamics is a determinant of the functional significance of missense variants  Luca Ponzoni and Ivet Bahar Chemistry Molecular excitonic seesaws Philipp Wilhelm, Jakob Schedlbauer, Florian Hinderer, Daniel Hennen, Sigurd Höger, Jan Vogelsang, and John M. Lupton Precise characterization of KRAS4b proteoforms in human colorectal cells and tumors reveals mutation/modification cross-talk Ioanna Ntai, Luca Fornelli, Caroline J. DeHart, Josiah E. Hutton, Peter F. Doubleday, Richard D. LeDuc, Alexandra J. van Nispen, Ryan T. Fellers, Gordon Whiteley, Emily S. Boja, Henry Rodriguez, and Neil L. Kelleher Direct electrochemical observation of glucosidase activity in isolated single lysosomes from a living cell  Rongrong Pan, Mingchen Xu, James D. Burgess, Dechen Jiang, and Hong-Yuan Chen Label-free and charge-sensitive dynamic imaging of lipid membrane hydration on millisecond time scales  Orly B. Tarun, Christof Hannesschläger, Peter Pohl, and Sylvie Roke Structural characterization of a non-heme iron active site in zeolites that hydroxylates methane Benjamin E. R. Snyder, Lars H. Böttger, Max L. Bols, James J. Yan, Hannah M. Rhoda, Ariel B. Jacobs, Michael Y. Hu, Jiyong Zhao, E. Ercan Alp, Britt Hedman, Keith O. Hodgson, Robert A. Schoonheydt, Bert F. Sels, and Edward I. Solomon Computer Sciences Word embeddings quantify 100 years of gender and ethnic stereotypes Nikhil Garg, Londa Schiebinger, Dan Jurafsky, and James Zou Earth, Atmospheric, and Planetary Sciences Seagrass habitat metabolism increases short-term extremes and long-term offset of CO2 under future ocean acidification Stephen R. Pacella, Cheryl A. Brown, George G. Waldbusser, Rochelle G. Labiosa, and Burke Hales Effects of iron on the lattice thermal conductivity of Earth's deep mantle and implications for mantle dynamics Wen-Pin Hsieh, Frédéric Deschamps, Takuo Okuchi, and Jung-Fu Lin Constraining the climate and ocean pH of the early Earth with a geological carbon cycle model  Joshua Krissansen-Totton, Giada N. Arney, and David C. Catling Critical impact of vegetation physiology on the continental hydrologic cycle in response to increasing CO2  Léo Lemordant, Pierre Gentine, Abigail S. Swann, Benjamin I. Cook, and Jacob Scheff Physics Topological order in the pseudogap metal Mathias S. Scheurer, Shubhayu Chatterjee, Wei Wu, Michel Ferrero, Antoine Georges, and Subir Sachdev Soft self-assembly of Weyl materials for light and sound Michel Fruchart, Seung-Yeol Jeon, Kahyun Hur, Vadim Cheianov, Ulrich Wiesner, and Vincenzo Vitelli Fluctuations uncover a distinct class of traveling waves  Gabriel Birzu, Oskar Hallatschek, and Kirill S. Korolev Mechanosensitivity of Jagged–Notch signaling can induce a switch-type behavior in vascular homeostasis  Sandra Loerakker, Oscar M. J. A. Stassen, Fleur M. ter Huurne, Marcelo Boareto, Carlijn V. C. Bouten, and Cecilia M. Sahlgren Sustainability Science China, the United States, and competition for resources that enable emerging technologies  Andrew L. Gulley, Nedal T. Nassar, and Sean Xun Social Sciences Anthropology Origins and spread of fluted-point technology in the Canadian Ice-Free Corridor and eastern Beringia Heather L. Smith and Ted Goebel Hominin skeletal part abundances and claims of deliberate disposal of corpses in the Middle Pleistocene Charles P. Egeland, Manuel Domínguez-Rodrigo, Travis Rayne Pickering, Colin G. Menter, and Jason L. Heaton Psychological and Cognitive Sciences The computational form of craving is a selective multiplication of economic value  Anna B. Konova, Kenway Louie, and Paul W. Glimcher Social Sciences Word embeddings quantify 100 years of gender and ethnic stereotypes Nikhil Garg, Londa Schiebinger, Dan Jurafsky, and James Zou Sustainability Science China, the United States, and competition for resources that enable emerging technologies  Andrew L. Gulley, Nedal T. Nassar, and Sean Xun Biological Sciences Anthropology Human bony labyrinth is an indicator of population history and dispersal from Africa  Marcia S. Ponce de León, Toetik Koesbardiati, John David Weissmann, Marco Milella, Carlos S. Reyna-Blanco, Gen Suwa, Osamu Kondo, Anna-Sapfo Malaspinas, Tim D. White, and Christoph P. E. Zollikofer Hip extensor mechanics and the evolution of walking and climbing capabilities in humans, apes, and fossil hominins  Elaine E. Kozma, Nicole M. Webb, William E. H. Harcourt-Smith, David A. Raichlen, Kristiaan D'Août, Mary H. Brown, Emma M. Finestone, Stephen R. Ross, Peter Aerts, and Herman Pontzer Applied Biological Sciences Complete biosynthesis of noscapine and halogenated alkaloids in yeast Yanran Li, Sijin Li, Kate Thodey, Isis Trenchard, Aaron Cravens, and Christina D. Smolke Biochemistry Molecular structural diversity of mitochondrial cardiolipins  Gregor Oemer, Katharina Lackner, Katharina Muigg, Gerhard Krumschnabel, Katrin Watschinger, Sabrina Sailer, Herbert Lindner, Erich Gnaiger, Saskia B. Wortmann, Ernst R. Werner, Johannes Zschocke, and Markus A. Keller Observation of acetyl phosphate formation in mammalian mitochondria using real-time in-organelle NMR metabolomics Wen Jun Xu, He Wen, Han Sun Kim, Yoon-Joo Ko, Seung-Mo Dong, In-Sun Park, Jong In Yook, and Sunghyouk Park Precise characterization of KRAS4b proteoforms in human colorectal cells and tumors reveals mutation/modification cross-talk Ioanna Ntai, Luca Fornelli, Caroline J. DeHart, Josiah E. Hutton, Peter F. Doubleday, Richard D. LeDuc, Alexandra J. van Nispen, Ryan T. Fellers, Gordon Whiteley, Emily S. Boja, Henry Rodriguez, and Neil L. Kelleher Oversized galactosides as a probe for conformational dynamics in LacY Irina Smirnova, Vladimir Kasho, Xiaoxu Jiang, Hong-Ming Chen, Stephen G. Withers, and H. Ronald Kaback Biophysics and Computational Biology Cell contraction induces long-ranged stress stiffening in the extracellular matrix Yu Long Han, Pierre Ronceray, Guoqiang Xu, Andrea Malandrino, Roger D. Kamm, Martin Lenz, Chase P. Broedersz, and Ming Guo Roll maneuvers are essential for active reorientation of Caenorhabditis elegans in 3D media Alejandro Bilbao, Amar K. Patel, Mizanur Rahman, Siva A. Vanapalli, and Jerzy Blawzdziewicz Spatial organization and dynamics of RNase E and ribosomes in Caulobacter crescentus Camille A. Bayas, Jiarui Wang, Marissa K. Lee, Jared M. Schrader, Lucy Shapiro, and W. E. Moerner Accurate and sensitive quantification of protein-DNA binding affinity  Chaitanya Rastogi, H. Tomas Rube, Judith F. Kribelbauer, Justin Crocker, Ryan E. Loker, Gabriella D. Martini, Oleg Laptenko, William A. Freed-Pastor, Carol Prives, David L. Stern, Richard S. Mann, and Harmen J. Bussemaker Label-free and charge-sensitive dynamic imaging of lipid membrane hydration on millisecond time scales  Orly B. Tarun, Christof Hannesschläger, Peter Pohl, and Sylvie Roke Microbes vs. chemistry in the origin of the anaerobic gut lumen Elliot S. Friedman, Kyle Bittinger, Tatiana V. Esipova, Likai Hou, Lillian Chau, Jack Jiang, Clementina Mesaros, Peder J. Lund, Xue Liang, Garret A. FitzGerald, Mark Goulian, Daeyeon Lee, Benjamin A. Garcia, Ian A. Blair, Sergei A. Vinogradov, and Gary D. Wu Structural dynamics is a determinant of the functional significance of missense variants  Luca Ponzoni and Ivet Bahar Mechanosensitivity of Jagged–Notch signaling can induce a switch-type behavior in vascular homeostasis  Sandra Loerakker, Oscar M. J. A. Stassen, Fleur M. ter Huurne, Marcelo Boareto, Carlijn V. C. Bouten, and Cecilia M. Sahlgren Cell Biology Myosin IIA interacts with the spectrin-actin membrane skeleton to control red blood cell membrane curvature and deformability Alyson S. Smith, Roberta B. Nowak, Sitong Zhou, Michael Giannetto, David S. Gokhin, Julien Papoin, Ionita C. Ghiran, Lionel Blanc, Jiandi Wan, and Velia M. Fowler Direct electrochemical observation of glucosidase activity in isolated single lysosomes from a living cell  Rongrong Pan, Mingchen Xu, James D. Burgess, Dechen Jiang, and Hong-Yuan Chen Increased autophagy blocks HER2-mediated breast tumorigenesis  Silvia Vega-Rubín-de-Celis, Zhongju Zou, Álvaro F. Fernández, Bo Ci, Min Kim, Guanghua Xiao, Yang Xie, and Beth Levine Insight from the maximal activation of the signal transduction excitable network in Dictyostelium discoideum  Marc Edwards, Huaqing Cai, Bedri Abubaker-Sharif, Yu Long, Thomas J. Lampert, and Peter N. Devreotes Developmental Biology Transient fibrosis resolves via fibroblast inactivation in the regenerating zebrafish heart  Héctor Sánchez-Iranzo, María Galardi-Castilla, Andrés Sanz-Morejón, Juan Manuel González-Rosa, Ricardo Costa, Alexander Ernst, Julio Sainz de Aja, Xavier Langa, and Nadia Mercader Evolutionary emergence of the rac3b/rfng/sgca regulatory cluster refined mechanisms for hindbrain boundaries formation Joaquín Letelier, Javier Terriente, Ivan Belzunce, Adria Voltes, Cristian Alberto Undurraga, Rocio Polvillo, Lucie Devos, Juan J. Tena, Ignacio Maeso, Sylvie Retaux, José Luis Gomez-Skarmeta, Juan R. Martínez-Morales, and Cristina Pujades Ecology Seagrass habitat metabolism increases short-term extremes and long-term offset of CO2 under future ocean acidification Stephen R. Pacella, Cheryl A. Brown, George G. Waldbusser, Rochelle G. Labiosa, and Burke Hales Evolution Fluctuations uncover a distinct class of traveling waves  Gabriel Birzu, Oskar Hallatschek, and Kirill S. Korolev Impact of the tree prior on estimating clock rates during epidemic outbreaks  Simon Möller, Louis du Plessis, and Tanja Stadler Genetics Transcriptional mutagenesis mediated by 8-oxoG induces translational errors in mammalian cells Da-Peng Dai, Wei Gan, Hiroshi Hayakawa, Jia-Lou Zhu, Xiu-Qing Zhang, Guo-Xin Hu, Tao Xu, Zhe-Li Jiang, Li-Qun Zhang, Xue-Da Hu, Ben Nie, Yue Zhou, Jin Li, Xiao-Yang Zhou, Jian Li, Tie-Mei Zhang, Qing He, Dong-Ge Liu, Hai-Bo Chen, Nan Yang, Ping-Ping Zuo, Zhi-Xin Zhang, Huan-Ming Yang, Yao Wang, Samuel H. Wilson, Yi-Xin Zeng, Jian-Ye Wang, Mutsuo Sekiguchi, and Jian-Ping Cai High-accuracy lagging-strand DNA replication mediated by DNA polymerase dissociation Katarzyna H. Maslowska, Karolina Makiela-Dzbenska, Jin-Yao Mo, Iwona J. Fijalkowska, and Roel M. Schaaper Autochthonous tumors driven by Rb1 loss have an ongoing requirement for the RBP2 histone demethylase Samuel K. McBrayer, Benjamin A. Olenchock, Gabriel J. DiNatale, Diana D. Shi, Januka Khanal, Rebecca B. Jennings, Jesse S. Novak, Matthew G. Oser, Alissa K. Robbins, Rebecca Modiste, Dennis Bonal, Javid Moslehi, Roderick T. Bronson, Donna Neuberg, Quang-De Nguyen, Sabina Signoretti, Julie-Aurore Losman, and William G. Kaelin Jr. Immunology and Inflammation Distinct MHC class I-like interacting invariant T cell lineage at the forefront of mycobacterial immunity uncovered in Xenopus Eva-Stina Edholm, Maureen Banach, Kun Hyoe Rhoo, Martin S. Pavelka Jr., and Jacques Robert Medical Sciences FAM210A is a novel determinant of bone and muscle structure and strength Ken-ichiro Tanaka, Yingben Xue, Loan Nguyen-Yamamoto, John A. Morris, Ippei Kanazawa, Toshitsugu Sugimoto, Simon S. Wing, J. Brent Richards, and David Goltzman Interrelated role of Klotho and calcium-sensing receptor in parathyroid hormone synthesis and parathyroid hyperplasia Yi Fan, Weiqing Liu, Ruiye Bi, Michael J. Densmore, Tadatoshi Sato, Michael Mannstadt, Quan Yuan, Xuedong Zhou, Hannes Olauson, Tobias E. Larsson, Hakan R. Toka, Martin R. Pollak, Edward M. Brown, and Beate Lanske Targeting galectin-1 inhibits pancreatic cancer progression by modulating tumor–stroma crosstalk Carlos A. Orozco, Neus Martinez-Bosch, Pedro E. Guerrero, Judith Vinaixa, Tomás Dalotto-Moreno, Mar Iglesias, Mireia Moreno, Magdolna Djurec, Françoise Poirier, Hans-Joachim Gabius, Martin E. Fernandez-Zapico, Rosa F. Hwang, Carmen Guerra, Gabriel A. Rabinovich, and Pilar Navarro Ablation of insulin receptor substrates 1 and 2 suppresses Kras-driven lung tumorigenesis He Xu, Min-Sik Lee, Pei-Yun Tsai, Ashley S. Adler, Natasha L. Curry, Saketh Challa, Elizaveta Freinkman, Daniel S. Hitchcock, Kyle D. Copps, Morris F. White, Roderick T. Bronson, Michael Marcotrigiano, Yaotang Wu, Clary B. Clish, and Nada Y. Kalaany Intron retention induced by microsatellite expansions as a disease biomarker Łukasz J. Sznajder, James D. Thomas, Ellie M. Carrell, Tammy Reid, Karen N. McFarland, John D. Cleary, Ruan Oliveira, Curtis A. Nutter, Kirti Bhatt, Krzysztof Sobczak, Tetsuo Ashizawa, Charles A. Thornton, Laura P. W. Ranum, and Maurice S. Swanson Learned immunosuppressive placebo responses in renal transplant patients  Julia Kirchhof, Liubov Petrakova, Alexandra Brinkhoff, Sven Benson, Justine Schmidt, Maike Unteroberdörster, Benjamin Wilde, Ted J. Kaptchuk, Oliver Witzke, and Manfred Schedlowski Establishment of human pluripotent stem cell-derived pancreatic β-like cells in the mouse pancreas Haiting Ma, Katherine J. Wert, Dmitry Shvartsman, Douglas A. Melton, and Rudolf Jaenisch Microbiology Superresolution microscopy reveals structural mechanisms driving the nanoarchitecture of a viral chromatin tether Margaret J. Grant, Matthew S. Loftus, Aiola P. Stoja, Dean H. Kedes, and M. Mitchell Smith Flavivirus internalization is regulated by a size-dependent endocytic pathway  Brent A. Hackett and Sara Cherry Multiple nuclear-replicating viruses require the stress-induced protein ZC3H11A for efficient growth  Shady Younis, Wael Kamel, Tina Falkeborn, Hao Wang, Di Yu, Robert Daniels, Magnus Essand, Jorma Hinkula, Göran Akusjärvi, and Leif Andersson The Vibrio cholerae type VI secretion system can modulate host intestinal mechanics to displace gut bacterial symbionts Savannah L. Logan, Jacob Thomas, Jinyuan Yan, Ryan P. Baker, Drew S. Shields, Joao B. Xavier, Brian K. Hammer, and Raghuveer Parthasarathy A small-molecule fragment that emulates binding of receptor and broadly neutralizing antibodies to influenza A hemagglutinin Rameshwar U. Kadam and Ian A. Wilson Plasticity in early immune evasion strategies of a bacterial pathogen Quentin Bernard, Alexis A. Smith, Xiuli Yang, Juraj Koci, Shelby D. Foor, Sarah D. Cramer, Xuran Zhuang, Jennifer E. Dwyer, Yi-Pin Lin, Emmanuel F. Mongodin, Adriana Marques, John M. Leong, Juan Anguita, and Utpal Pal SAMHD1 suppresses innate immune responses to viral infections and inflammatory stimuli by inhibiting the NF-κB and interferon pathways Shuliang Chen, Serena Bonifati, Zhihua Qin, Corine St. Gelais, Karthik M. Kodigepalli, Bradley S. Barrett, Sun Hee Kim, Jenna M. Antonucci, Katherine J. Ladner, Olga Buzovetsky, Kirsten M. Knecht, Yong Xiong, Jacob S. Yount, Denis C. Guttridge, Mario L. Santiago, and Li Wu Neuroscience Spatial eye–hand coordination during bimanual reaching is not systematically coded in either LIP or PRR  Eric Mooshagian and Lawrence H. Snyder Ectopic neurogenesis induced by prenatal antiepileptic drug exposure augments seizure susceptibility in adult mice  Atsuhiko Sakai, Taito Matsuda, Hiroyoshi Doi, Yukiko Nagaishi, Kiyoko Kato, and Kinichi Nakashima Long-term in vivo recording of circadian rhythms in brains of freely moving mice Long Mei, Yanyan Fan, Xiaohua Lv, David K. Welsh, Cheng Zhan, and Eric Erquan Zhang Second-order spinal cord pathway contributes to cortical responses after long recoveries from dorsal column injury in squirrel monkeys Chia-Chi Liao, Jamie L. Reed, Hui-Xin Qi, Eva K. Sawyer, and Jon H. Kaas Identification of long-lived synaptic proteins by proteomic analysis of synaptosome protein turnover Seok Heo, Graham H. Diering, Chan Hyun Na, Raja Sekhar Nirujogi, Julia L. Bachman, Akhilesh Pandey, and Richard L. Huganir Pharmacology Activation of AMPK by metformin improves withdrawal signs precipitated by nicotine withdrawal  Julia K. Brynildsen, Bridgin G. Lee, Isaac J. Perron, Sunghee Jin, Sangwon F. Kim, and Julie A. Blendy Plant Biology Phytophthora palmivora establishes tissue-specific intracellular infection structures in the earliest divergent land plant lineage  Philip Carella, Anna Gogleva, Marta Tomaselli, Carolin Alfs, and Sebastian Schornack Negative regulator of E2F transcription factors links cell cycle checkpoint and DNA damage repair Lili Wang, Hanchen Chen, Chongyang Wang, Zhenjie Hu, and Shunping Yan Population Biology Hybridization and gene flow in the mega-pest lineage of moth, Helicoverpa  Craig J. Anderson, John G. Oakeshott, Wee Tek Tay, Karl H. J. Gordon, Andreas Zwick, and Tom K. Walsh Systems Biology Robust, linear correlations between growth rates and β-lactam–mediated lysis rates Anna J. Lee, Shangying Wang, Hannah R. Meredith, Bihan Zhuang, Zhuojun Dai, and Lingchong You Role of metabolic spatiotemporal dynamics in regulating biofilm colony expansion Federico Bocci, Yoko Suzuki, Mingyang Lu, and José N. Onuchic Corrections Correction for Itkin et al., The biosynthetic pathway of the nonsugar, high-intensity sweetener mogroside V from Siraitia grosvenorii Correction for Li et al., Regulator of G protein signaling 5 protects against cardiac hypertrophy and fibrosis during biomechanical stress of pressure overload Correction for Chen et al., B7-H1 maintains the polyclonal T cell response by protecting dendritic cells from cytotoxic T lymphocyte destruction Correction for Ramus et al,. An invasive foundation species enhances multifunctionality in a coastal ecosystem Correction for Jiang et al., Proteins induced by telomere dysfunction and DNA damage represent biomarkers of human aging and disease Correction for Bevan et al., Holocene fluctuations in human population demonstrate repeated links to food production and climate This message was sent to pascal.alter@gmail.com. (....) Copyright © 2018 by the National Academy of Sciences