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Fwd: PNAS Section Alert for August 23, 2016

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Date: Wed, Aug 24, 2016 at 5:43 AM
Subject: PNAS Section Alert for August 23, 2016
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PNAS    Proceedings of the National Academy of Sciences
Agricultural Sciences
Autophagy and ubiquitin–proteasome system contribute to sperm mitophagy after mammalian fertilization
Won-Hee Song, Young-Joo Yi, Miriam Sutovsky, Stuart Meyers, and Peter Sutovsky

Genetics
Overexpression screens identify conserved dosage chromosome instability genes in yeast and human cancer Open Access Article Inaugural Article
Supipi Duffy, Hok Khim Fam, Yi Kan Wang, Erin B. Styles, Jung-Hyun Kim, J. Sidney Ang, Tejomayee Singh, Vladimir Larionov, Sohrab P. Shah, Brenda Andrews, Cornelius F. Boerkoel, and Philip Hieter
Tandem duplications contribute to not one but two distinct phenotypes
Johnathan Watkins, Andrew Tutt, and Anita Grigoriadis
Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63 Open Access Article
Jianwei Zhang, Ling-Ling Chen, Feng Xing, David A. Kudrna, Wen Yao, Dario Copetti, Ting Mu, Weiming Li, Jia-Ming Song, Weibo Xie, Seunghee Lee, Jayson Talag, Lin Shao, Yue An, Chun-Liu Zhang, Yidan Ouyang, Shuai Sun, Wen-Biao Jiao, Fang Lv, Bogu Du, Meizhong Luo, Carlos Ernesto Maldonado, Jose Luis Goicoechea, Lizhong Xiong, Changyin Wu, Yongzhong Xing, Dao-Xiu Zhou, Sibin Yu, Yu Zhao, Gongwei Wang, Yeisoo Yu, Yijie Luo, Zhi-Wei Zhou, Beatriz Elena Padilla Hurtado, Ann Danowitz, Rod A. Wing, and Qifa Zhang

Immunology and Inflammation
Protein kinase CK2 governs the molecular decision between encephalitogenic TH17 cell and Treg cell development
Alexander Ulges, Esther J. Witsch, Gautam Pramanik, Matthias Klein, Katharina Birkner, Ulrike Bühler, Beatrice Wasser, Felix Luessi, Natascha Stergiou, Sarah Dietzen, Till-Julius Brühl, Toszka Bohn, Georg Bündgen, Horst Kunz, Ari Waisman, Hansjörg Schild, Edgar Schmitt, Frauke Zipp, and Tobias Bopp
NK cells activated by Interleukin-4 in cooperation with Interleukin-15 exhibit distinctive characteristics
Tsuyoshi Kiniwa, Yutaka Enomoto, Natsumi Terazawa, Ai Omi, Naoko Miyata, Kenji Ishiwata, and Atsushi Miyajima
Human mucosal-associated invariant T cells contribute to antiviral influenza immunity via IL-18–dependent activation Open Access Article
Liyen Loh, Zhongfang Wang, Sneha Sant, Marios Koutsakos, Sinthujan Jegaskanda, Alexandra J. Corbett, Ligong Liu, David P. Fairlie, Jane Crowe, Jamie Rossjohn, Jianqing Xu, Peter C. Doherty, James McCluskey, and Katherine Kedzierska
Glimpse of natural selection of long-lived T-cell clones in healthy life
Baojun Zhang, Qingzhu Jia, Cheryl Bock, Gang Chen, Haili Yu, Qingshan Ni, Ying Wan, Qijing Li, and Yuan Zhuang

Applied Biological Sciences
Biophysical insight into mechanisms of sonoporation
Brandon Helfield, Xucai Chen, Simon C. Watkins, and Flordeliza S. Villanueva

Applied Mathematics
Fundamental structures of dynamic social networks Open Access Article
Vedran Sekara, Arkadiusz Stopczynski, and Sune Lehmann
Rich gets simpler
Renaud Lambiotte

Medical Sciences
Using the shortwave infrared to image middle ear pathologies
Jessica A. Carr, Tulio A. Valdez, Oliver T. Bruns, and Moungi G. Bawendi
Why Cockayne syndrome patients do not get cancer despite their DNA repair deficiency
Kate S. Reid-Bayliss, Sarah T. Arron, Lawrence A. Loeb, Vladimir Bezrookove, and James E. Cleaver

Applied Physical Sciences
Reply to Smith: Electrorheological technology reduces the chocolate viscosity and fat level
Rongjia Tao, Hong Tang, Kazi Tawhid-Al-Islam, Enpeng Du, and Jeongyoon Kim
Sandwich-structured polymer nanocomposites with high energy density and great charge–discharge efficiency at elevated temperatures
Qi Li, Feihua Liu, Tiannan Yang, Matthew R. Gadinski, Guangzu Zhang, Long-Qing Chen, and Qing Wang
Using the shortwave infrared to image middle ear pathologies
Jessica A. Carr, Tulio A. Valdez, Oliver T. Bruns, and Moungi G. Bawendi
Biophysical insight into mechanisms of sonoporation
Brandon Helfield, Xucai Chen, Simon C. Watkins, and Flordeliza S. Villanueva
Assembly of porous smectic structures formed from interlocking high-symmetry planar nanorings
Carlos Avendaño, George Jackson, Erich A. Müller, and Fernando A. Escobedo

Microbiology
Vibrio cholerae biofilm growth program and architecture revealed by single-cell live imaging
Jing Yan, Andrew G. Sharo, Howard A. Stone, Ned S. Wingreen, and Bonnie L. Bassler
Disulfide cross-linking influences symbiotic activities of nodule peptide NCR247
Mohammed Shabab, Markus F. F. Arnold, Jon Penterman, Andrew J. Wommack, Hartmut T. Bocker, Paul A. Price, Joel S. Griffitts, Elizabeth M. Nolan, and Graham C. Walker
Light-driven carbon dioxide reduction to methane by nitrogenase in a photosynthetic bacterium Open Access Article
Kathryn R. Fixen, Yanning Zheng, Derek F. Harris, Sudipta Shaw, Zhi-Yong Yang, Dennis R. Dean, Lance C. Seefeldt, and Caroline S. Harwood
Comparative genomics of biotechnologically important yeasts
Robert Riley, Sajeet Haridas, Kenneth H. Wolfe, Mariana R. Lopes, Chris Todd Hittinger, Markus Göker, Asaf A. Salamov, Jennifer H. Wisecaver, Tanya M. Long, Christopher H. Calvey, Andrea L. Aerts, Kerrie W. Barry, Cindy Choi, Alicia Clum, Aisling Y. Coughlan, Shweta Deshpande, Alexander P. Douglass, Sara J. Hanson, Hans-Peter Klenk, Kurt M. LaButti, Alla Lapidus, Erika A. Lindquist, Anna M. Lipzen, Jan P. Meier-Kolthoff, Robin A. Ohm, Robert P. Otillar, Jasmyn L. Pangilinan, Yi Peng, Antonis Rokas, Carlos A. Rosa, Carmen Scheuner, Andriy A. Sibirny, Jason C. Slot, J. Benjamin Stielow, Hui Sun, Cletus P. Kurtzman, Meredith Blackwell, Igor V. Grigoriev, and Thomas W. Jeffries

Neuroscience
Semantic representations in the temporal pole predict false memories Open Access Article
Martin J. Chadwick, Raeesa S. Anjum, Dharshan Kumaran, Daniel L. Schacter, Hugo J. Spiers, and Demis Hassabis
Regional scattering of primate subplate
Zoltán Molnár and Anna Hoerder-Suabedissen
Endogenous macrophage migration inhibitory factor reduces the accumulation and toxicity of misfolded SOD1 in a mouse model of ALS
Marcel F. Leyton-Jaimes, Clara Benaim, Salah Abu-Hamad, Joy Kahn, Amos Guetta, Richard Bucala, and Adrian Israelson

Biochemistry
Catalytic strategy for carbon−carbon bond scission by the cytochrome P450 OleT
Job L. Grant, Megan E. Mitchell, and Thomas Michael Makris
Precision glycocalyx editing as a strategy for cancer immunotherapy
Han Xiao, Elliot C. Woods, Petar Vukojicic, and Carolyn R. Bertozzi

Pharmacology
Signal transmission through the CXC chemokine receptor 4 (CXCR4) transmembrane helices
Melanie P. Wescott, Irina Kufareva, Cheryl Paes, Jason R. Goodman, Yana Thaker, Bridget A. Puffer, Eli Berdougo, Joseph B. Rucker, Tracy M. Handel, and Benjamin J. Doranz

Biophysics and Computational Biology
Changes in active site histidine hydrogen bonding trigger cryptochrome activation
Abir Ganguly, Craig C. Manahan, Deniz Top, Estella F. Yee, Changfan Lin, Michael W. Young, Walter Thiel, and Brian R. Crane
Clues to the mechanism of cholesterol transfer from the structure of NPC1 middle lumenal domain bound to NPC2 Open Access Article
Xiaochun Li, Piyali Saha, Jian Li, Günter Blobel, and Suzanne R. Pfeffer
Paradoxical signaling regulates structural plasticity in dendritic spines
Padmini Rangamani, Michael G. Levy, Shahid Khan, and George Oster
Superresolution intrinsic fluorescence imaging of chromatin utilizing native, unmodified nucleic acids for contrast Open Access Article
Biqin Dong, Luay M. Almassalha, Yolanda Stypula-Cyrus, Ben E. Urban, John E. Chandler, The-Quyen Nguyen, Cheng Sun, Hao F. Zhang, and Vadim Backman

Physics
The price of complexity in financial networks Open Access Article
Stefano Battiston, Guido Caldarelli, Robert M. May, Tarik Roukny, and Joseph E. Stiglitz

Cell Biology
PLEKHG3 enhances polarized cell migration by activating actin filaments at the cell front Open Access Article
Trang Thi Thu Nguyen, Wei Sun Park, Byung Ouk Park, Cha Yeon Kim, Yohan Oh, Jin Man Kim, Hana Choi, Taeyoon Kyung, Cheol-Hee Kim, Gabsang Lee, Klaus M. Hahn, Tobias Meyer, and Won Do Heo
Clathrin light chains' role in selective endocytosis influences antibody isotype switching
Shuang Wu, Sophia R. Majeed, Timothy M. Evans, Marine D. Camus, Nicole M. L. Wong, Yvette Schollmeier, Minjong Park, Jagan R. Muppidi, Andrea Reboldi, Peter Parham, Jason G. Cyster, and Frances M. Brodsky
Binding of EBP50 to Nox organizing subunit p47phox is pivotal to cellular reactive species generation and altered vascular phenotype
Imad Al Ghouleh, Daniel N. Meijles, Stephanie Mutchler, Qiangmin Zhang, Sanghamitra Sahoo, Anastasia Gorelova, Jefferson Henrich Amaral, Andrés I. Rodríguez, Tatyana Mamonova, Gyun Jee Song, Alessandro Bisello, Peter A. Friedman, M. Eugenia Cifuentes-Pagano, and Patrick J. Pagano
Lysine methylation represses p53 activity in teratocarcinoma cancer cells
Jiajun Zhu, Zhixun Dou, Morgan A. Sammons, Arnold J. Levine, and Shelley L. Berger

Physiology
Bioelectric impact of pathological angiogenesis on vascular function Open Access Article
Donald G. Puro, Ryohsuke Kohmoto, Yasushi Fujita, Thomas W. Gardner, and Dolly A. Padovani-Claudio
Stromal uptake and transmission of acid is a pathway for venting cancer cell-generated acid Open Access Article
Alzbeta Hulikova, Nicholas Black, Lin-Ting Hsia, Jennifer Wilding, Walter F. Bodmer, and Pawel Swietach

Chemistry
Catalytic strategy for carbon−carbon bond scission by the cytochrome P450 OleT
Job L. Grant, Megan E. Mitchell, and Thomas Michael Makris
Changes in active site histidine hydrogen bonding trigger cryptochrome activation
Abir Ganguly, Craig C. Manahan, Deniz Top, Estella F. Yee, Changfan Lin, Michael W. Young, Walter Thiel, and Brian R. Crane
Precision glycocalyx editing as a strategy for cancer immunotherapy
Han Xiao, Elliot C. Woods, Petar Vukojicic, and Carolyn R. Bertozzi

Plant Biology
Cytosolic activation of cell death and stem rust resistance by cereal MLA-family CC–NLR proteins
Stella Cesari, John Moore, Chunhong Chen, Daryl Webb, Sambasivam Periyannan, Rohit Mago, Maud Bernoux, Evans S. Lagudah, and Peter N. Dodds
Regulatory network analysis reveals novel regulators of seed desiccation tolerance in Arabidopsis thaliana Open Access Article
Sandra Isabel González-Morales, Ricardo A. Chávez-Montes, Corina Hayano-Kanashiro, Gerardo Alejo-Jacuinde, Thelma Y. Rico-Cambron, Stefan de Folter, and Luis Herrera-Estrella

Developmental Biology
Hedgehog-dependent E3-ligase Midline1 regulates ubiquitin-mediated proteasomal degradation of Pax6 during visual system development
Thorsten Pfirrmann, Enrico Jandt, Swantje Ranft, Ashwin Lokapally, Herbert Neuhaus, Muriel Perron, and Thomas Hollemann
Stepwise metamorphosis of the tubeworm Hydroides elegans is mediated by a bacterial inducer and MAPK signaling Open Access Article
Nicholas J. Shikuma, Igor Antoshechkin, João M. Medeiros, Martin Pilhofer, and Dianne K. Newman
Notch-mediated lateral inhibition regulates proneural wave propagation when combined with EGF-mediated reaction diffusion Open Access Article
Makoto Sato, Tetsuo Yasugi, Yoshiaki Minami, Takashi Miura, and Masaharu Nagayama

Earth, Atmospheric, and Planetary Sciences
Jury is still out on the radiative forcing by black carbon
Olivier Boucher, Yves Balkanski, Øivind Hodnebrog, Cathrine Lund Myhre, Gunnar Myhre, Johannes Quaas, Bjørn Hallvard Samset, Nick Schutgens, Philip Stier, and Rong Wang
Direct observation of aqueous secondary organic aerosol from biomass-burning emissions Open Access Article
Stefania Gilardoni, Paola Massoli, Marco Paglione, Lara Giulianelli, Claudio Carbone, Matteo Rinaldi, Stefano Decesari, Silvia Sandrini, Francesca Costabile, Gian Paolo Gobbi, Maria Chiara Pietrogrande, Marco Visentin, Fabiana Scotto, Sandro Fuzzi, and Maria Cristina Facchini

Psychological and Cognitive Sciences
Self-regulation via neural simulation
Michael Gilead, Chelsea Boccagno, Melanie Silverman, Ran R. Hassin, Jochen Weber, and Kevin N. Ochsner
Semantic representations in the temporal pole predict false memories Open Access Article
Martin J. Chadwick, Raeesa S. Anjum, Dharshan Kumaran, Daniel L. Schacter, Hugo J. Spiers, and Demis Hassabis
How chimpanzees cooperate in a competitive world
Malini Suchak, Timothy M. Eppley, Matthew W. Campbell, Rebecca A. Feldman, Luke F. Quarles, and Frans B. M. de Waal
Power in everyday life
Pamela K. Smith and Wilhelm Hofmann

Ecology

Social Sciences
Fundamental structures of dynamic social networks Open Access Article
Vedran Sekara, Arkadiusz Stopczynski, and Sune Lehmann
Rich gets simpler
Renaud Lambiotte

Economic Sciences
The price of complexity in financial networks Open Access Article
Stefano Battiston, Guido Caldarelli, Robert M. May, Tarik Roukny, and Joseph E. Stiglitz

Engineering
Superresolution intrinsic fluorescence imaging of chromatin utilizing native, unmodified nucleic acids for contrast Open Access Article
Biqin Dong, Luay M. Almassalha, Yolanda Stypula-Cyrus, Ben E. Urban, John E. Chandler, The-Quyen Nguyen, Cheng Sun, Hao F. Zhang, and Vadim Backman

Environmental Sciences

Systems Biology
pH determines the energetic efficiency of the cyanobacterial CO2 concentrating mechanism
Niall M. Mangan, Avi Flamholz, Rachel D. Hood, Ron Milo, and David F. Savage

Evolution
Nutrition mediates the expression of cultivar–farmer conflict in a fungus-growing ant Open Access Article
Jonathan Z. Shik, Ernesto B. Gomez, Pepijn W. Kooij, Juan C. Santos, William T. Wcislo, and Jacobus J. Boomsma
Geography and major host evolutionary transitions shape the resource use of plant parasites
Joaquín Calatayud, José Luis Hórreo, Jaime Madrigal-González, Alain Migeon, Miguel Á. Rodríguez, Sara Magalhães, and Joaquín Hortal

QnAs
QnAs with Huda Y. Zoghbi
Prashant Nair

In This Issue

Letters and Replies
Jury is still out on the radiative forcing by black carbon
Olivier Boucher, Yves Balkanski, Øivind Hodnebrog, Cathrine Lund Myhre, Gunnar Myhre, Johannes Quaas, Bjørn Hallvard Samset, Nick Schutgens, Philip Stier, and Rong Wang
Reply to Smith: Electrorheological technology reduces the chocolate viscosity and fat level
Rongjia Tao, Hong Tang, Kazi Tawhid-Al-Islam, Enpeng Du, and Jeongyoon Kim
Tandem duplications contribute to not one but two distinct phenotypes
Johnathan Watkins, Andrew Tutt, and Anita Grigoriadis

Open Access
From the Cover
Inaugural Article
Classic
Cozzarelli Prize Winner
Front Matter

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