wtorek, 19 maja 2015

Fwd: PNAS Table of Contents for 19 May 2015; Vol. 112, No. 20

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Subject: PNAS Table of Contents for 19 May 2015; Vol. 112, No. 20
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PNAS    Proceedings of the National Academy of Sciences

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This Week in PNAS

Letters (Online Only)
Putative extremely long evolutionary stasis in bacteria might be explained by serial convergence
Petr Dvořák, Dale A. Casamatta, Petr Hašler, and Aloisie Poulíčková
Reply to Dvořák et al.: Apparent evolutionary stasis of ancient subseafloor sulfur cycling biocoenoses
J. William Schopf, Anatoliy B. Kudryavtsev, Malcolm R. Walter, Martin J. Van Kranendonk, Kenneth H. Williford, Reinhard Kozdon, John W. Valley, Victor A. Gallardo, Carola Espinoza, and David T. Flannery

Core Concepts
A brief introduction to emerging topics in science.

Retrospective
Lester Reed: A "complex" man who loved science
Marvin L. Hackert, Dean R. Appling, and Alan M. Lambowitz

Commentaries
Regulation of oxygen delivery to the body via hypoxic vasodilation
Shathiyah Kulandavelu, Wayne Balkan, and Joshua M. Hare

PNAS Plus Significance Statements
Brief statements written by the authors about the significance of their papers.

Industrial Ecology: The Role Of Manufactured Capital For Sustainability Special Feature (Free Online)
Introduction
Industrial Ecology: The role of manufactured capital in sustainability From the Cover
Helga Weisz, Sangwon Suh, and T. E. Graedel
Physical Sciences — Sustainability Science
The material footprint of nations
Thomas O. Wiedmann, Heinz Schandl, Manfred Lenzen, Daniel Moran, Sangwon Suh, James West, and Keiichiro Kanemoto
Identifying and designing chemicals with minimal acute aquatic toxicity
Jakub Kostal, Adelina Voutchkova-Kostal, Paul T. Anastas, and Julie Beth Zimmerman
Physical Sciences — Sustainability Science - Social Sciences — Sustainability Science
On the materials basis of modern society
T. E. Graedel, E. M. Harper, N. T. Nassar, and Barbara K. Reck
Social Sciences — Sustainability Science - Physical Sciences — Environmental Sciences
Integrated life-cycle assessment of electricity-supply scenarios confirms global environmental benefit of low-carbon technologies
Edgar G. Hertwich, Thomas Gibon, Evert A. Bouman, Anders Arvesen, Sangwon Suh, Garvin A. Heath, Joseph D. Bergesen, Andrea Ramirez, Mabel I. Vega, and Lei Shi
Social Sciences — Sustainability Science - Physical Sciences — Sustainability Science
Global typology of urban energy use and potentials for an urbanization mitigation wedge
Felix Creutzig, Giovanni Baiocchi, Robert Bierkandt, Peter-Paul Pichler, and Karen C. Seto

Physical Sciences
Applied Physical Sciences
Capillary muscle
Caroline Cohen, Timothée Mouterde, David Quéré, and Christophe Clanet
Chemistry
Role of a ribosomal RNA phosphate oxygen during the EF-G–triggered GTP hydrolysis Open Access Article
Miriam Koch, Sara Flür, Christoph Kreutz, Eric Ennifar, Ronald Micura, and Norbert Polacek
Rational design of self-assembly pathways for complex multicomponent structures
William M. Jacobs, Aleks Reinhardt, and Daan Frenkel
Mechanism of pyranopterin ring formation in molybdenum cofactor biosynthesis
Bradley M. Hover, Nam K. Tonthat, Maria A. Schumacher, and Kenichi Yokoyama
Earth, Atmospheric, and Planetary Sciences
Cahokia's emergence and decline coincided with shifts of flood frequency on the Mississippi River
Samuel E. Munoz, Kristine E. Gruley, Ashtin Massie, David A. Fike, Sissel Schroeder, and John W. Williams
Environmental Sciences
Evaluating a groundwater supply contamination incident attributed to Marcellus Shale gas development
Garth T. Llewellyn, Frank Dorman, J. L. Westland, D. Yoxtheimer, Paul Grieve, Todd Sowers, E. Humston-Fulmer, and Susan L. Brantley
Physics
Elastocapillary interactions on nematic films
Iris B. Liu, Mohamed A. Gharbi, Victor L. Ngo, Randall D. Kamien, Shu Yang, and Kathleen J. Stebe
Signature properties of water: Their molecular electronic origins
Vlad P. Sokhan, Andrew P. Jones, Flaviu S. Cipcigan, Jason Crain, and Glenn J. Martyna
Statistics
Ambiguity and nonidentifiability in the statistical analysis of neural codes Open Access Article
Asohan Amarasingham, Stuart Geman, and Matthew T. Harrison

Social Sciences
Anthropology
Cahokia's emergence and decline coincided with shifts of flood frequency on the Mississippi River
Samuel E. Munoz, Kristine E. Gruley, Ashtin Massie, David A. Fike, Sissel Schroeder, and John W. Williams
Psychological and Cognitive Sciences

Biological Sciences
Biochemistry
Role of a ribosomal RNA phosphate oxygen during the EF-G–triggered GTP hydrolysis Open Access Article
Miriam Koch, Sara Flür, Christoph Kreutz, Eric Ennifar, Ronald Micura, and Norbert Polacek
Genetically encoded sensors of protein hydrodynamics and molecular proximity
Alexander C. Hoepker, Ariel Wang, Alix Le Marois, Klaus Suhling, Yuling Yan, and Gerard Marriott
Mechanism of pyranopterin ring formation in molybdenum cofactor biosynthesis
Bradley M. Hover, Nam K. Tonthat, Maria A. Schumacher, and Kenichi Yokoyama
Activation of the bacterial thermosensor DesK involves a serine zipper dimerization motif that is modulated by bilayer thickness
Larisa Estefanía Cybulski, Joost Ballering, Anastassiia Moussatova, Maria Eugenia Inda, Daniela B. Vazquez, Tsjerk A. Wassenaar, Diego de Mendoza, D. Peter Tieleman, and J. Antoinette Killian
Biophysics and Computational Biology
Organization and dynamics of the nonhomologous end-joining machinery during DNA double-strand break repair
Dylan A. Reid, Sarah Keegan, Alejandra Leo-Macias, Go Watanabe, Natasha T. Strande, Howard H. Chang, Betul Akgol Oksuz, David Fenyo, Michael R. Lieber, Dale A. Ramsden, and Eli Rothenberg
Ligand deconstruction: Why some fragment binding positions are conserved and others are not Open Access Article
Dima Kozakov, David R. Hall, Sefan Jehle, Lingqi Luo, Stefan O. Ochiana, Elizabeth V. Jones, Michael Pollastri, Karen N. Allen, Adrian Whitty, and Sandor Vajda
Mechanical stimulation induces formin-dependent assembly of a perinuclear actin rim Open Access Article
Xiaowei Shao, Qingsen Li, Alex Mogilner, Alexander D. Bershadsky, and G. V. Shivashankar
Hydration water mobility is enhanced around tau amyloid fibers Open Access Article
Yann Fichou, Giorgio Schirò, François-Xavier Gallat, Cedric Laguri, Martine Moulin, Jérôme Combet, Michaela Zamponi, Michael Härtlein, Catherine Picart, Estelle Mossou, Hugues Lortat-Jacob, Jacques-Philippe Colletier, Douglas J. Tobias, and Martin Weik
Cytoplasmic dynein regulates its attachment to microtubules via nucleotide state-switched mechanosensing at multiple AAA domains Open Access Article
Matthew P. Nicholas, Florian Berger, Lu Rao, Sibylle Brenner, Carol Cho, and Arne Gennerich
Cell Biology
Therapeutic effects of cell-permeant peptides that activate G proteins downstream of growth factors
Gary S. Ma, Nicolas Aznar, Nicholas Kalogriopoulos, Krishna K. Midde, Inmaculada Lopez-Sanchez, Emi Sato, Ying Dunkel, Richard L. Gallo, and Pradipta Ghosh
Apolipoprotein CIII links islet insulin resistance to β-cell failure in diabetes
Karin Åvall, Yusuf Ali, Ingo B. Leibiger, Barbara Leibiger, Tilo Moede, Meike Paschen, Andrea Dicker, Elisabetta Daré, Martin Köhler, Erwin Ilegems, Midhat H. Abdulreda, Mark Graham, Rosanne M. Crooke, Vanessa S. Y. Tay, Essam Refai, Stefan K. Nilsson, Stefan Jacob, Lars Selander, Per-Olof Berggren, and Lisa Juntti-Berggren
Dictyostelium discoideum has a highly Q/N-rich proteome and shows an unusual resilience to protein aggregation Open Access Article
Liliana Malinovska, Sandra Palm, Kimberley Gibson, Jean-Marc Verbavatz, and Simon Alberti
Bestrophin 1 is indispensable for volume regulation in human retinal pigment epithelium cells Open Access Article
Andrea Milenkovic, Caroline Brandl, Vladimir M. Milenkovic, Thomas Jendryke, Lalida Sirianant, Potchanart Wanitchakool, Stephanie Zimmermann, Charlotte M. Reiff, Franziska Horling, Heinrich Schrewe, Rainer Schreiber, Karl Kunzelmann, Christian H. Wetzel, and Bernhard H. F. Weber
The membrane remodeling protein Pex11p activates the GTPase Dnm1p during peroxisomal fission Open Access Article
Chris Williams, Lukasz Opalinski, Christiane Landgraf, Joseph Costello, Michael Schrader, Arjen M. Krikken, Kèvin Knoops, Anita M. Kram, Rudolf Volkmer, and Ida J. van der Klei
Developmental Biology
Ecology
Metabolic theory and taxonomic identity predict nutrient recycling in a diverse food web
Jacob Edward Allgeier, Seth J. Wenger, Amy D. Rosemond, Daniel E. Schindler, and Craig A. Layman
Supplementary feeding restructures urban bird communities
Josie A. Galbraith, Jacqueline R. Beggs, Darryl N. Jones, and Margaret C. Stanley
Species fluctuations sustained by a cyclic succession at the edge of chaos From the Cover
Elisa Benincà, Bill Ballantine, Stephen P. Ellner, and Jef Huisman
Predator lipids induce paralytic shellfish toxins in bloom-forming algae Open Access Article
Erik Selander, Julia Kubanek, Mats Hamberg, Mats X. Andersson, Gunnar Cervin, and Henrik Pavia
Evolution
Obstruction of adaptation in diploids by recessive, strongly deleterious alleles
Zoe June Assaf, Dmitri A. Petrov, and Jamie R. Blundell
Limits to adaptation along environmental gradients
Jitka Polechová and Nicholas H. Barton
Extreme selective sweeps independently targeted the X chromosomes of the great apes Open Access Article
Kiwoong Nam, Kasper Munch, Asger Hobolth, Julien Yann Dutheil, Krishna R. Veeramah, August E. Woerner, Michael F. Hammer, Great Ape Genome Diversity Project, Thomas Mailund, and Mikkel Heide Schierup
Genetics
Lack of pairing during meiosis triggers multigenerational transgene silencing in Caenorhabditis elegans
Luciana E. Leopold, Bree N. Heestand, Soobin Seong, Ludmila Shtessel, and Shawn Ahmed
Medical Sciences
Interleukin-6/interleukin-21 signaling axis is critical in the pathogenesis of pulmonary arterial hypertension Open Access Article
Takahiro Hashimoto-Kataoka, Naoki Hosen, Takashi Sonobe, Yoh Arita, Taku Yasui, Takeshi Masaki, Masato Minami, Tadakatsu Inagaki, Shigeru Miyagawa, Yoshiki Sawa, Masaaki Murakami, Atsushi Kumanogoh, Keiko Yamauchi-Takihara, Meinoshin Okumura, Tadamitsu Kishimoto, Issei Komuro, Mikiyasu Shirai, Yasushi Sakata, and Yoshikazu Nakaoka
CD4 mimetics sensitize HIV-1-infected cells to ADCC
Jonathan Richard, Maxime Veillette, Nathalie Brassard, Shilpa S. Iyer, Michel Roger, Loïc Martin, Marzena Pazgier, Arne Schön, Ernesto Freire, Jean-Pierre Routy, Amos B. Smith III, Jongwoo Park, David M. Jones, Joel R. Courter, Bruno N. Melillo, Daniel E. Kaufmann, Beatrice H. Hahn, Sallie R. Permar, Barton F. Haynes, Navid Madani, Joseph G. Sodroski, and Andrés Finzi
Hemoglobin βCys93 is essential for cardiovascular function and integrated response to hypoxia From the Cover
Rongli Zhang, Douglas T. Hess, Zhaoxia Qian, Alfred Hausladen, Fabio Fonseca, Ruchi Chaube, James D. Reynolds, and Jonathan S. Stamler
Microbiology
Sequence type 1 group B Streptococcus, an emerging cause of invasive disease in adults, evolves by small genetic changes
Anthony R. Flores, Jessica Galloway-Peña, Pranoti Sahasrabhojane, Miguel Saldaña, Hui Yao, Xiaoping Su, Nadim J. Ajami, Michael E. Holder, Joseph F. Petrosino, Erika Thompson, Immaculada Margarit Y Ros, Roberto Rosini, Guido Grandi, Nicola Horstmann, Sarah Teatero, Allison McGeer, Nahuel Fittipaldi, Rino Rappuoli, Carol J. Baker, and Samuel A. Shelburne
MurJ and a novel lipid II flippase are required for cell wall biogenesis in Bacillus subtilis
Alexander J. Meeske, Lok-To Sham, Harvey Kimsey, Byoung-Mo Koo, Carol A. Gross, Thomas G. Bernhardt, and David Z. Rudner
Structural details of the OxyR peroxide-sensing mechanism Open Access Article
Inseong Jo, In-Young Chung, Hee-Won Bae, Jin-Sik Kim, Saemee Song, You-Hee Cho, and Nam-Chul Ha
Metabolic dependencies drive species co-occurrence in diverse microbial communities Open Access Article
Aleksej Zelezniak, Sergej Andrejev, Olga Ponomarova, Daniel R. Mende, Peer Bork, and Kiran Raosaheb Patil
Neuroscience
Modulation of extrasynaptic NMDA receptors by synaptic and tonic zinc
Charles T. Anderson, Robert J. Radford, Melissa L. Zastrow, Daniel Y. Zhang, Ulf-Peter Apfel, Stephen J. Lippard, and Thanos Tzounopoulos
The phototransduction machinery in the rod outer segment has a strong efficacy gradient Open Access Article
Monica Mazzolini, Giuseppe Facchetti, Laura Andolfi, Remo Proietti Zaccaria, Salvatore Tuccio, Johannes Treu, Claudio Altafini, Enzo M. Di Fabrizio, Marco Lazzarino, Gert Rapp, and Vincent Torre
Neuronal medium that supports basic synaptic functions and activity of human neurons in vitro Open Access Article
Cedric Bardy, Mark van den Hurk, Tameji Eames, Cynthia Marchand, Ruben V. Hernandez, Mariko Kellogg, Mark Gorris, Ben Galet, Vanessa Palomares, Joshua Brown, Anne G. Bang, Jerome Mertens, Lena Böhnke, Leah Boyer, Suzanne Simon, and Fred H. Gage
Ambiguity and nonidentifiability in the statistical analysis of neural codes Open Access Article
Asohan Amarasingham, Stuart Geman, and Matthew T. Harrison
Neuronal thresholds and choice-related activity of otolith afferent fibers during heading perception
Xiong-jie Yu, J. David Dickman, Gregory C. DeAngelis, and Dora E. Angelaki
Stable long-range interhemispheric coordination is supported by direct anatomical projections
Kelly Shen, Bratislav Mišić, Ben N. Cipollini, Gleb Bezgin, Martin Buschkuehl, R. Matthew Hutchison, Susanne M. Jaeggi, Ethan Kross, Scott J. Peltier, Stefan Everling, John Jonides, Anthony R. McIntosh, and Marc G. Berman
Activity-dependent, homeostatic regulation of neurotransmitter release from auditory nerve fibers
Tenzin Ngodup, Jack A. Goetz, Brian C. McGuire, Wei Sun, Amanda M. Lauer, and Matthew A. Xu-Friedman
Specialization and integration of functional thalamocortical connectivity in the human infant Open Access Article
Hilary Toulmin, Christian F. Beckmann, Jonathan O'Muircheartaigh, Gareth Ball, Pumza Nongena, Antonios Makropoulos, Ashraf Ederies, Serena J. Counsell, Nigel Kennea, Tomoki Arichi, Nora Tusor, Mary A. Rutherford, Denis Azzopardi, Nuria Gonzalez-Cinca, Joseph V. Hajnal, and A. David Edwards
Pharmacology
Platelet Gi protein Gαi2 is an essential mediator of thrombo-inflammatory organ damage in mice
Vasudharani Devanathan, Ina Hagedorn, David Köhler, Katja Pexa, Deya Cherpokova, Peter Kraft, Madhurendra Singh, Peter Rosenberger, Guido Stoll, Lutz Birnbaumer, Roland P. Piekorz, Sandra Beer-Hammer, Bernhard Nieswandt, and Bernd Nürnberg
Physiology
Capillary muscle
Caroline Cohen, Timothée Mouterde, David Quéré, and Christophe Clanet
G-protein βγ subunits are positive regulators of Kv7.4 and native vascular Kv7 channel activity
Jennifer B. Stott, Oleksandr V. Povstyan, Georgina Carr, Vincenzo Barrese, and Iain A. Greenwood
Psychological and Cognitive Sciences
Place recognition and heading retrieval are mediated by dissociable cognitive systems in mice
Joshua B. Julian, Alexander T. Keinath, Isabel A. Muzzio, and Russell A. Epstein
Age-related changes in working memory and the ability to ignore distraction
Fiona McNab, Peter Zeidman, Robb B. Rutledge, Peter Smittenaar, Harriet R. Brown, Rick A. Adams, and Raymond J. Dolan

Corrections (Online Only)

Retraction (Online Only)
Cover

Open Access
From the Cover
Inaugural Article
Classic
Cozzarelli Prize Winner
Front Matter

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