Fwd: PNAS Section Alert for 30 May 2014

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Proceedings of the National Academy of Sciences Section Alert articles for 30 May 2014 Profile Profile of Bruce Levin Beth Azar Physical Sciences Applied Physical Sciences Nonequilibrium dynamics and ultraslow relaxation of confined DNA during viral packaging Zachary T. Berndsen, Nicholas Keller, Shelley Grimes, Paul J. Jardine, and Douglas E. Smith Navigability of interconnected networks under random failures Manlio De Domenico, Albert Solé-Ribalta, Sergio Gómez, and Alex Arenas Astronomy Titan solar occultation observations reveal transit spectra of a hazy world Tyler D. Robinson, Luca Maltagliati, Mark S. Marley, and Jonathan J. Fortney Physics Quantum critical behavior in heavy electron materials Yi-feng Yang and David Pines Chaos–order transition in foraging behavior of ants Lixiang Li, Haipeng Peng, Jürgen Kurths, Yixian Yang, and Hans Joachim Schellnhuber Theory of amorphous ices David T. Limmer and David Chandler Chemistry Highly enantioselective synthesis of γ-, δ-, and ε-chiral 1-alkanols via Zr-catalyzed asymmetric carboalumination of alkenes (ZACA)–Cu- or Pd-catalyzed cross-coupling Shiqing Xu, Akimichi Oda, Hirofumi Kamada, and Ei-ichi Negishi Scalable production of mechanically tunable block polymers from sugar  Mingyong Xiong, Deborah K. Schneiderman, Frank S. Bates, Marc A. Hillmyer, and Kechun Zhang Solid-state structures of peapod bearings composed of finite single-wall carbon nanotube and fullerene molecules Sota Sato, Takashi Yamasaki, and Hiroyuki Isobe Synthesis of terephthalic acid via Diels-Alder reactions with ethylene and oxidized variants of 5-hydroxymethylfurfural  Joshua J. Pacheco and Mark E. Davis Earth, Atmospheric, and Planetary Sciences Reassessing the biogenicity of Earth's oldest trace fossil with implications for biosignatures in the search for early life  Eugene G. Grosch and Nicola McLoughlin Geomechanical behavior of the reservoir and caprock system at the In Salah CO2 storage project  Joshua A. White, Laura Chiaramonte, Souheil Ezzedine, William Foxall, Yue Hao, Abelardo Ramirez, and Walt McNab Sustainability Science Evaluating the utility of dynamical downscaling in agricultural impacts projections Michael Glotter, Joshua Elliott, David McInerney, Neil Best, Ian Foster, and Elisabeth J. Moyer Global evaluation of biofuel potential from microalgae  Jeffrey W. Moody, Christopher M. McGinty, and Jason C. Quinn Social Sciences Anthropology Vaccinating captive chimpanzees to save wild chimpanzees Kelly L. Warfield, Jason E. Goetzmann, Julia E. Biggins, Mary Beth Kasda, Robert C. Unfer, Hong Vu, M. Javad Aman, Gene Gerrard Olinger, Jr., and Peter D. Walsh Psychological and Cognitive Sciences Father's brain is sensitive to childcare experiences  Eyal Abraham, Talma Hendler, Irit Shapira-Lichter, Yaniv Kanat-Maymon, Orna Zagoory-Sharon, and Ruth Feldman Biological Sciences Genetics Identification of genes preventing transgenerational transmission of stress-induced epigenetic states Mayumi Iwasaki and Jerzy Paszkowski Intestinal cell kinase, a protein associated with endocrine-cerebro-osteodysplasia syndrome, is a key regulator of cilia length and Hedgehog signaling Heejung Moon, Jieun Song, Jeong-Oh Shin, Hankyu Lee, Hong-Kyung Kim, Jonathan T. Eggenschwiller, Jinwoong Bok, and Hyuk Wan Ko Immunology Regulatory T cells modulate granulomatous inflammation in an HLA-DP2 transgenic murine model of beryllium-induced disease  Douglas G. Mack, Michael T. Falta, Amy S. McKee, Allison K. Martin, Philip L. Simonian, Frances Crawford, Terry Gordon, Robert R. Mercer, Mark D. Hoover, Philippa Marrack, John W. Kappler, Rubin M. Tuder, and Andrew P. Fontenot Vaccinating captive chimpanzees to save wild chimpanzees Kelly L. Warfield, Jason E. Goetzmann, Julia E. Biggins, Mary Beth Kasda, Robert C. Unfer, Hong Vu, M. Javad Aman, Gene Gerrard Olinger, Jr., and Peter D. Walsh IL-15.IL-15Rα complex shedding following trans-presentation is essential for the survival of IL-15 responding NK and T cells Fella Tamzalit, Isabelle Barbieux, Ariane Plet, Julie Heim, Steven Nedellec, Sébastien Morisseau, Yannick Jacques, and Erwan Mortier IκB kinase-induced interaction of TPL-2 kinase with 14-3-3 is essential for Toll-like receptor activation of ERK-1 and -2 MAP kinases Abduelhakem Ben-Addi, Agnes Mambole-Dema, Christine Brender, Stephen R. Martin, Julia Janzen, Sven Kjaer, Stephen J. Smerdon, and Steven C. Ley Loss of the death receptor CD95 (Fas) expression by dendritic cells protects from a chronic viral infection Vineeth Varanasi, Aly Azeem Khan, and Alexander V. Chervonsky Applied Biological Sciences Scalable production of mechanically tunable block polymers from sugar  Mingyong Xiong, Deborah K. Schneiderman, Frank S. Bates, Marc A. Hillmyer, and Kechun Zhang Medical Sciences Ribosomal protein–Mdm2–p53 pathway coordinates nutrient stress with lipid metabolism by regulating MCD and promoting fatty acid oxidation Yong Liu, Yizhou He, Aiwen Jin, Andrey P. Tikunov, Lishi Zhou, Laura A. Tollini, Patrick Leslie, Tae-Hyung Kim, Lei O. Li, Rosalind A. Coleman, Zhennan Gu, Yong Q. Chen, Jeffrey M. Macdonald, Lee M. Graves, and Yanping Zhang PHLDA3 is a novel tumor suppressor of pancreatic neuroendocrine tumors Rieko Ohki, Kozue Saito, Yu Chen, Tatsuya Kawase, Nobuyoshi Hiraoka, Raira Saigawa, Maiko Minegishi, Yukie Aita, Goichi Yanai, Hiroko Shimizu, Shinichi Yachida, Naoaki Sakata, Ryuichiro Doi, Tomoo Kosuge, Kazuaki Shimada, Benjamin Tycko, Toshihiko Tsukada, Yae Kanai, Shoichiro Sumi, Hideo Namiki, Yoichi Taya, Tatsuhiro Shibata, and Hitoshi Nakagama Endogenous retrovirus induces leukemia in a xenograft mouse model for primary myelofibrosis Ioanna Triviai, Marion Ziegler, Ulla Bergholz, Andrew J. Oler, Thomas Stübig, Vladimir Prassolov, Boris Fehse, Christine A. Kozak, Nicolaus Kröger, and Carol Stocking Microbiology Unitary step of gliding machinery in Mycoplasma mobile Yoshiaki Kinosita, Daisuke Nakane, Mitsuhiro Sugawa, Tomoko Masaike, Kana Mizutani, Makoto Miyata, and Takayuki Nishizaka PipX, the coactivator of NtcA, is a global regulator in cyanobacteria Javier Espinosa, Francisco Rodríguez-Mateos, Paloma Salinas, Val F. Lanza, Ray Dixon, Fernando de la Cruz, and Asuncion Contreras Neuroscience Functional magnetic resonance microscopy at single-cell resolution in Aplysia californica   Guillaume Radecki, Romuald Nargeot, Ileana Ozana Jelescu, Denis Le Bihan, and Luisa Ciobanu Cognitive flexibility and long-term depression (LTD) are impaired following β-catenin stabilization in vivo Fergil Mills, Thomas E. Bartlett, Lasse Dissing-Olesen, Marta B. Wisniewska, Jacek Kuznicki, Brian A. Macvicar, Yu Tian Wang, and Shernaz X. Bamji Switching brain serotonin with oxytocin Raphaelle Mottolese, Jérôme Redouté, Nicolas Costes, Didier Le Bars, and Angela Sirigu Impact of puberty on the evolution of cerebral perfusion during adolescence Theodore D. Satterthwaite, Russell T. Shinohara, Daniel H. Wolf, Ryan D. Hopson, Mark A. Elliott, Simon N. Vandekar, Kosha Ruparel, Monica E. Calkins, David R. Roalf, Efstathios D. Gennatas, Chad Jackson, Guray Erus, Karthik Prabhakaran, Christos Davatzikos, John A. Detre, Hakon Hakonarson, Ruben C. Gur, and Raquel E. Gur Mechanisms underlying differential effectiveness of memantine and ketamine in rapid antidepressant responses Erinn S. Gideons, Ege T. Kavalali, and Lisa M. Monteggia GABAA receptor target of tetramethylenedisulfotetramine Chunqing Zhao, Sung Hee Hwang, Bruce A. Buchholz, Timothy S. Carpenter, Felice Lightstone, Jun Yang, Bruce D. Hammock, and John E. Casida Visualizing synaptic vesicle turnover and pool refilling driven by calcium nanodomains at presynaptic active zones of ribbon synapses Thirumalini Vaithianathan and Gary Matthews Encoding and storage of spatial information in the retrosplenial cortex Rafał Czajkowski, Balaji Jayaprakash, Brian Wiltgen, Thomas Rogerson, Mikael C. Guzman-Karlsson, Alison L. Barth, Joshua T. Trachtenberg, and Alcino J. Silva Biochemistry Real-time conformational changes in LacY Irina Smirnova, Vladimir Kasho, and H. Ronald Kaback Control of catalytic efficiency by a coevolving network of catalytic and noncatalytic residues Thomas A. McMurrough, Russell J. Dickson, Stephanie M. F. Thibert, Gregory B. Gloor, and David R. Edgell Structural and functional characterization of a conserved pair of bacterial cellulose-oxidizing lytic polysaccharide monooxygenases Zarah Forsberg, Alasdair K. Mackenzie, Morten Sørlie, Åsmund K. Røhr, Ronny Helland, Andrew S. Arvai, Gustav Vaaje-Kolstad, and Vincent G. H. Eijsink Direct observation of R-loop formation by single RNA-guided Cas9 and Cascade effector complexes Mark D. Szczelkun, Maria S. Tikhomirova, Tomas Sinkunas, Giedrius Gasiunas, Tautvydas Karvelis, Patrizia Pschera, Virginijus Siksnys, and Ralf Seidel Pivotal role for the ubiquitin Y59-E51 loop in lysine 48 polyubiquitination Robert A. Chong, Kenneth Wu, Donald E. Spratt, Yingying Yang, Chan Lee, Jaladhi Nayak, Ming Xu, Rana Elkholi, Inger Tappin, Jessica Li, Jerard Hurwitz, Brian D. Brown, Jerry Edward Chipuk, Zhijian J. Chen, Roberto Sanchez, Gary S. Shaw, Lan Huang, and Zhen-Qiang Pan Coliphage HK022 Nun protein inhibits RNA polymerase translocation Christal L. Vitiello, Maria L. Kireeva, Lucyna Lubkowska, Mikhail Kashlev, and Max Gottesman Pharmacology Molecular determinants of Hv1 proton channel inhibition by guanidine derivatives Liang Hong, Iris H. Kim, and Francesco Tombola Biophysics and Computational Biology Optimal lamellar arrangement in fish gills  Keunhwan Park, Wonjung Kim, and Ho-Young Kim Use of transmission electron microscopy to identify nanocrystals of challenging protein targets Hilary P. Stevenson, Alexander M. Makhov, Monica Calero, Andrea L. Edwards, Oliver B. Zeldin, Irimpan I. Mathews, Guowu Lin, Christopher O. Barnes, Hugo Santamaria, Ted M. Ross, S. Michael Soltis, Chaitan Khosla, V. Nagarajan, James F. Conway, Aina E. Cohen, and Guillermo Calero Nonequilibrium dynamics and ultraslow relaxation of confined DNA during viral packaging Zachary T. Berndsen, Nicholas Keller, Shelley Grimes, Paul J. Jardine, and Douglas E. Smith Accounting for a mirror-image conformation as a subtle effect in protein folding Khatuna Kachlishvili, Gia G. Maisuradze, Osvaldo A. Martin, Adam Liwo, Jorge A. Vila, and Harold A. Scheraga Characterization and development of photoactivatable fluorescent proteins for single-molecule–based superresolution imaging Siyuan Wang, Jeffrey R. Moffitt, Graham T. Dempsey, X. Sunney Xie, and Xiaowei Zhuang Microscopic insights into the protein-stabilizing effect of trimethylamine N-oxide (TMAO) Jianqiang Ma, Ileana M. Pazos, and Feng Gai Cell Biology Targeting RPL39 and MLF2 reduces tumor initiation and metastasis in breast cancer by inhibiting nitric oxide synthase signaling  Bhuvanesh Dave, Sergio Granados-Principal, Rui Zhu, Stephen Benz, Shahrooz Rabizadeh, Patrick Soon-Shiong, Ke-Da Yu, Zhimin Shao, Xiaoxian Li, Michael Gilcrease, Zhao Lai, Yidong Chen, Tim H.-M. Huang, Haifa Shen, Xuewu Liu, Mauro Ferrari, Ming Zhan, Stephen T. C. Wong, Muthiah Kumaraswami, Vivek Mittal, Xi Chen, Steven S. Gross, and Jenny C. Chang Prosurvival Bcl-2 family members affect autophagy only indirectly, by inhibiting Bax and Bak Lisa M. Lindqvist, Melanie Heinlein, David C. S. Huang, and David L. Vaux Genome-wide RNAi screen identifies the Parkinson disease GWAS risk locus SREBF1 as a regulator of mitophagy  Rachael M. Ivatt, Alvaro Sanchez-Martinez, Vinay K. Godena, Stephen Brown, Elena Ziviani, and Alexander J. Whitworth Shear stress-dependent regulation of apical endocytosis in renal proximal tubule cells mediated by primary cilia Venkatesan Raghavan, Youssef Rbaibi, Núria M. Pastor-Soler, Marcelo D. Carattino, and Ora A. Weisz Membrane raft association is a determinant of plasma membrane localization Blanca B. Diaz-Rohrer, Kandice R. Levental, Kai Simons, and Ilya Levental Physiology Up-regulation of glycolytic metabolism is required for HIF1α-driven bone formation Jenna N. Regan, Joohyun Lim, Yu Shi, Kyu Sang Joeng, Jeffrey M. Arbeit, Ralph V. Shohet, and Fanxin Long Plant Biology Regulation of photosystem I light harvesting by zeaxanthin Matteo Ballottari, Marcelo J. P. Alcocer, Cosimo D'Andrea, Daniele Viola, Tae Kyu Ahn, Annamaria Petrozza, Dario Polli, Graham R. Fleming, Giulio Cerullo, and Roberto Bassi Mechanical constraints imposed by 3D cellular geometry and arrangement modulate growth patterns in the Arabidopsis embryo  George W. Bassel, Petra Stamm, Gabriella Mosca, Pierre Barbier de Reuille, Daniel J. Gibbs, Robin Winter, Ales Janka, Michael J. Holdsworth, and Richard S. Smith Investigation of triterpene synthesis and regulation in oats reveals a role for β-amyrin in determining root epidermal cell patterning  Ariane C. Kemen, Suvi Honkanen, Rachel E. Melton, Kim C. Findlay, Sam T. Mugford, Keiko Hayashi, Kosmas Haralampidis, Susan J. Rosser, and Anne Osbourn Developmental Biology Existing cardiomyocytes generate cardiomyocytes at a low rate after birth in mice Shah R. Ali, Simon Hippenmeyer, Lily V. Saadat, Liqun Luo, Irving L. Weissman, and Reza Ardehali Yolk-sac–derived macrophages regulate fetal testis vascularization and morphogenesis Tony DeFalco, Indrashis Bhattacharya, Alyna V. Williams, Dustin M. Sams, and Blanche Capel From confluent human iPS cells to self-forming neural retina and retinal pigmented epithelium Sacha Reichman, Angélique Terray, Amélie Slembrouck, Céline Nanteau, Gaël Orieux, Walter Habeler, Emeline F. Nandrot, José-Alain Sahel, Christelle Monville, and Olivier Goureau Ecology Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice  Jun Wang, Miriam Linnenbrink, Sven Künzel, Ricardo Fernandes, Marie-Josée Nadeau, Philip Rosenstiel, and John F. Baines Commonness and rarity in the marine biosphere  Sean R. Connolly, M. Aaron MacNeil, M. Julian Caley, Nancy Knowlton, Ed Cripps, Mizue Hisano, Loïc M. Thibaut, Bhaskar D. Bhattacharya, Lisandro Benedetti-Cecchi, Russell E. Brainard, Angelika Brandt, Fabio Bulleri, Kari E. Ellingsen, Stefanie Kaiser, Ingrid Kröncke, Katrin Linse, Elena Maggi, Timothy D. O'Hara, Laetitia Plaisance, Gary C. B. Poore, Santosh K. Sarkar, Kamala K. Satpathy, Ulrike Schückel, Alan Williams, and Robin S. Wilson Chaos–order transition in foraging behavior of ants Lixiang Li, Haipeng Peng, Jürgen Kurths, Yixian Yang, and Hans Joachim Schellnhuber Sustainability Science Global evaluation of biofuel potential from microalgae  Jeffrey W. Moody, Christopher M. McGinty, and Jason C. Quinn Evolution Loss of quaternary structure is associated with rapid sequence divergence in the OSBS family Denis Odokonyero, Ayano Sakai, Yury Patskovsky, Vladimir N. Malashkevich, Alexander A. Fedorov, Jeffrey B. Bonanno, Elena V. Fedorov, Rafael Toro, Rakhi Agarwal, Chenxi Wang, Nicole D. S. Ozerova, Wen Shan Yew, J. Michael Sauder, Subramanyam Swaminathan, Stephen K. Burley, Steven C. Almo, and Margaret E. Glasner Hedgehog signaling mediates adaptive variation in a dynamic functional system in the cichlid feeding apparatus Yinan Hu and R. Craig Albertson Open Access From the Cover Inaugural Article Classic Cozzarelli Prize Winner Front Matter This message was sent to pascal.alter@gmail.com. (....) 425 Broadway St * Redwood City, CA 94063 * U.S.A. Copyright © 2014 by the National Academy of Sciences