czwartek, 6 listopada 2014

Fwd: PNAS Early Edition for 6 Nov 2014


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From: <pnas-mailer@alerts.stanford.edu>
Date: Thu, Nov 6, 2014 at 9:24 AM
Subject: PNAS Early Edition for 6 Nov 2014
To: pascal.alter@gmail.com


PNAS    Proceedings of the National Academy of Sciences
Letters (Online Only)
Not surprisingly, no inheritance of a trait results in no evolution
Philip W. Hedrick, David W. Coltman, Marco Festa-Bianchet, and Fanie Pelletier

QnAs
QnAs with Mary C. Waters
Tinsley H. Davis

Commentaries
Impact of early-stage HIV transmission on treatment as prevention
Kimberly A. Powers, Mirjam E. Kretzschmar, William C. Miller, and Myron S. Cohen

Feature Articles

Physical Sciences
Applied Mathematics
Applied Physical Sciences
Acceleration of evolutionary spread by long-range dispersal Open Access Article
Oskar Hallatschek and Daniel S. Fisher
Chemistry
Copper is an endogenous modulator of neural circuit spontaneous activity
Sheel C. Dodani, Alana Firl, Jefferson Chan, Christine I. Nam, Allegra T. Aron, Carl S. Onak, Karla M. Ramos-Torres, Jaeho Paek, Corey M. Webster, Marla B. Feller, and Christopher J. Chang
Negamycin induces translational stalling and miscoding by binding to the small subunit head domain of the Escherichia coli ribosome Open Access Article
Nelson B. Olivier, Roger B. Altman, Jonas Noeske, Gregory S. Basarab, Erin Code, Andrew D. Ferguson, Ning Gao, Jian Huang, Manuel F. Juette, Stephania Livchak, Matthew D. Miller, D. Bryan Prince, Jamie H. D. Cate, Ed T. Buurman, and Scott C. Blanchard
Luminescence color switching of supramolecular assemblies of discrete molecular decanuclear gold(I) sulfido complexes
Franky Ka-Wah Hau, Terence Kwok-Ming Lee, Eddie Chung-Chin Cheng, Vonika Ka-Man Au, and Vivian Wing-Wah Yam
Earth, Atmospheric, and Planetary Sciences
Far-infrared surface emissivity and climate Open Access Article
Daniel R. Feldman, William D. Collins, Robert Pincus, Xianglei Huang, and Xiuhong Chen
Topography's crucial role in Heinrich Events
William H. G. Roberts, Paul J. Valdes, and Antony J. Payne
Late Miocene episodic lakes in the arid Tarim Basin, western China
Weiguo Liu, Zhonghui Liu, Zhisheng An, Jimin Sun, Hong Chang, Ning Wang, Jibao Dong, and Huanye Wang
Basin-scale estimates of pelagic and coral reef calcification in the Red Sea and Western Indian Ocean Open Access Article
Zvi Steiner, Jonathan Erez, Aldo Shemesh, Ruth Yam, Amitai Katz, and Boaz Lazar
Engineering
Simple battery armor to protect against gastrointestinal injury from accidental ingestion
Bryan Laulicht, Giovanni Traverso, Vikram Deshpande, Robert Langer, and Jeffrey M. Karp
Asymmetric hindwing foldings in rove beetles
Kazuya Saito, Shuhei Yamamoto, Munetoshi Maruyama, and Yoji Okabe
Sustainability Science
Disentangling the effects of CO2 and short-lived climate forcer mitigation Open Access Article
Joeri Rogelj, Michiel Schaeffer, Malte Meinshausen, Drew T. Shindell, William Hare, Zbigniew Klimont, Guus J. M. Velders, Markus Amann, and Hans Joachim Schellnhuber

Social Sciences
Psychological and Cognitive Sciences
Decreased segregation of brain systems across the healthy adult lifespan Open Access Article
Micaela Y. Chan, Denise C. Park, Neil K. Savalia, Steven E. Petersen, and Gagan S. Wig
Probabilistic cognition in two indigenous Mayan groups
Laura Fontanari, Michel Gonzalez, Giorgio Vallortigara, and Vittorio Girotto
Purpose in life and use of preventive health care services
Eric S. Kim, Victor J. Strecher, and Carol D. Ryff

Biological Sciences
Agricultural Sciences
Days to heading 7, a major quantitative locus determining photoperiod sensitivity and regional adaptation in rice Open Access Article
He Gao, Mingna Jin, Xiao-Ming Zheng, Jun Chen, Dingyang Yuan, Yeyun Xin, Maoqing Wang, Dongyi Huang, Zhe Zhang, Kunneng Zhou, Peike Sheng, Jin Ma, Weiwei Ma, Huafeng Deng, Ling Jiang, Shijia Liu, Haiyang Wang, Chuanyin Wu, Longping Yuan, and Jianmin Wan
Applied Biological Sciences
Asymmetric hindwing foldings in rove beetles
Kazuya Saito, Shuhei Yamamoto, Munetoshi Maruyama, and Yoji Okabe
Sexual transfer of the steroid hormone 20E induces the postmating switch in Anopheles gambiae Open Access Article
Paolo Gabrieli, Evdoxia G. Kakani, Sara N. Mitchell, Enzo Mameli, Elizabeth J. Want, Ainhoa Mariezcurrena Anton, Aurelio Serrao, Francesco Baldini, and Flaminia Catteruccia
Biochemistry
Liat1, an arginyltransferase-binding protein whose evolution among primates involved changes in the numbers of its 10-residue repeats
Christopher S. Brower, Connor E. Rosen, Richard H. Jones, Brandon C. Wadas, Konstantin I. Piatkov, and Alexander Varshavsky
Molecular insights into DNA interference by CRISPR-associated nuclease-helicase Cas3
Bei Gong, Minsang Shin, Jiali Sun, Che-Hun Jung, Edward L. Bolt, John van der Oost, and Jeong-Sun Kim
c-Abl tyrosine kinase promotes adipocyte differentiation by targeting PPAR-gamma 2
Rom Keshet, Zina Bryansker Kraitshtein, Matan Shanzer, Julia Adler, Nina Reuven, and Yosef Shaul
Differential gradients of interaction affinities drive efficient targeting and recycling in the GET pathway
Michael E. Rome, Un Seng Chio, Meera Rao, Harry Gristick, and Shu-ou Shan
Calcium-mediated histone modifications regulate alternative splicing in cardiomyocytes
Alok Sharma, Hieu Nguyen, Cuiyu Geng, Melissa N. Hinman, Guangbin Luo, and Hua Lou
Negamycin induces translational stalling and miscoding by binding to the small subunit head domain of the Escherichia coli ribosome Open Access Article
Nelson B. Olivier, Roger B. Altman, Jonas Noeske, Gregory S. Basarab, Erin Code, Andrew D. Ferguson, Ning Gao, Jian Huang, Manuel F. Juette, Stephania Livchak, Matthew D. Miller, D. Bryan Prince, Jamie H. D. Cate, Ed T. Buurman, and Scott C. Blanchard
Goniometer-based femtosecond crystallography with X-ray free electron lasers Open Access Article
Aina E. Cohen, S. Michael Soltis, Ana González, Laura Aguila, Roberto Alonso-Mori, Christopher O. Barnes, Elizabeth L. Baxter, Winnie Brehmer, Aaron S. Brewster, Axel T. Brunger, Guillermo Calero, Joseph F. Chang, Matthieu Chollet, Paul Ehrensberger, Thomas L. Eriksson, Yiping Feng, Johan Hattne, Britt Hedman, Michael Hollenbeck, James M. Holton, Stephen Keable, Brian K. Kobilka, Elena G. Kovaleva, Andrew C. Kruse, Henrik T. Lemke, Guowu Lin, Artem Y. Lyubimov, Aashish Manglik, Irimpan I. Mathews, Scott E. McPhillips, Silke Nelson, John W. Peters, Nicholas K. Sauter, Clyde A. Smith, Jinhu Song, Hilary P. Stevenson, Yingssu Tsai, Monarin Uervirojnangkoorn, Vladimir Vinetsky, Soichi Wakatsuki, William I. Weis, Oleg A. Zadvornyy, Oliver B. Zeldin, Diling Zhu, and Keith O. Hodgson
Biophysics and Computational Biology
Cell Biology
Copper is an endogenous modulator of neural circuit spontaneous activity
Sheel C. Dodani, Alana Firl, Jefferson Chan, Christine I. Nam, Allegra T. Aron, Carl S. Onak, Karla M. Ramos-Torres, Jaeho Paek, Corey M. Webster, Marla B. Feller, and Christopher J. Chang
Long-range enhancer activity determines Myc sensitivity to Notch inhibitors in T cell leukemia
Yumi Yashiro-Ohtani, Hongfang Wang, Chongzhi Zang, Kelly L. Arnett, Will Bailis, Yugong Ho, Birgit Knoechel, Claudia Lanauze, Lumena Louis, Katherine S. Forsyth, Sujun Chen, Yoonjie Chung, Jonathan Schug, Gerd A. Blobel, Stephen A. Liebhaber, Bradley E. Bernstein, Stephen C. Blacklow, Xiaole Shirley Liu, Jon C. Aster, and Warren S. Pear
Microtubules stabilize cell polarity by localizing rear signals
Jian Zhang, Wei-Hui Guo, and Yu-Li Wang
Actions of the protein kinase WNK1 on endothelial cells are differentially mediated by its substrate kinases OSR1 and SPAK
Hashem A. Dbouk, Lauren M. Weil, G. K. Sachith Perera, Michael T. Dellinger, Gray Pearson, Rolf A. Brekken, and Melanie H. Cobb
Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential Inaugural Article
Jennifer M. Hurley, Arko Dasgupta, Jillian M. Emerson, Xiaoying Zhou, Carol S. Ringelberg, Nicole Knabe, Anna M. Lipzen, Erika A. Lindquist, Christopher G. Daum, Kerrie W. Barry, Igor V. Grigoriev, Kristina M. Smith, James E. Galagan, Deborah Bell-Pedersen, Michael Freitag, Chao Cheng, Jennifer J. Loros, and Jay C. Dunlap
Developmental Biology
Single Lgr5- or Lgr6-expressing taste stem/progenitor cells generate taste bud cells ex vivo
Wenwen Ren, Brian C. Lewandowski, Jaime Watson, Eitaro Aihara, Ken Iwatsuki, Alexander A. Bachmanov, Robert F. Margolskee, and Peihua Jiang
Sexually dimorphic expression of Mafb regulates masculinization of the embryonic urethral formation Open Access Article
Kentaro Suzuki, Tomokazu Numata, Hiroko Suzuki, Dennis Diana Raga, Lerrie Ann Ipulan, Chikako Yokoyama, Shoko Matsushita, Michito Hamada, Naomi Nakagata, Ryuichi Nishinakamura, Shoen Kume, Satoru Takahashi, and Gen Yamada
K-RasV14I recapitulates Noonan syndrome in mice
Isabel Hernández-Porras, Salvatore Fabbiano, Alberto J. Schuhmacher, Alexandra Aicher, Marta Cañamero, Juan Antonio Cámara, Lorena Cussó, Manuel Desco, Christopher Heeschen, Francisca Mulero, Xosé R. Bustelo, Carmen Guerra, and Mariano Barbacid
Environmental Sciences
Isotopic signals of summer denitrification in a northern hardwood forested catchment
Sarah K. Wexler, Christine L. Goodale, Kevin J. McGuire, Scott W. Bailey, and Peter M. Groffman
Evolution
Acceleration of evolutionary spread by long-range dispersal Open Access Article
Oskar Hallatschek and Daniel S. Fisher
Maximum likelihood inference of reticulate evolutionary histories
Yun Yu, Jianrong Dong, Kevin J. Liu, and Luay Nakhleh
Trajectory and genomic determinants of fungal-pathogen speciation and host adaptation Open Access Article
Xiao Hu, Guohua Xiao, Peng Zheng, Yanfang Shang, Yao Su, Xinyu Zhang, Xingzhong Liu, Shuai Zhan, Raymond J. St. Leger, and Chengshu Wang
Rapid changes in the gut microbiome during human evolution
Andrew H. Moeller, Yingying Li, Eitel Mpoudi Ngole, Steve Ahuka-Mundeke, Elizabeth V. Lonsdorf, Anne E. Pusey, Martine Peeters, Beatrice H. Hahn, and Howard Ochman
Directed evolution of an ultrastable carbonic anhydrase for highly efficient carbon capture from flue gas
Oscar Alvizo, Luan J. Nguyen, Christopher K. Savile, Jamie A. Bresson, Satish L. Lakhapatri, Earl O. P. Solis, Richard J. Fox, James M. Broering, Michael R. Benoit, Sabrina A. Zimmerman, Scott J. Novick, Jack Liang, and James J. Lalonde
Genetics
siRNAs from an X-linked satellite repeat promote X-chromosome recognition in Drosophila melanogaster Open Access Article
Debashish U. Menon, Cristian Coarfa, Weimin Xiao, Preethi H. Gunaratne, and Victoria H. Meller
Rapid diversification of five Oryza AA genomes associated with rice adaptation Open Access Article
Qun-Jie Zhang, Ting Zhu, En-Hua Xia, Chao Shi, Yun-Long Liu, Yun Zhang, Yuan Liu, Wen-Kai Jiang, You-Jie Zhao, Shu-Yan Mao, Li-Ping Zhang, Hui Huang, Jun-Ying Jiao, Ping-Zhen Xu, Qiu-Yang Yao, Fan-Chun Zeng, Li-Li Yang, Ju Gao, Da-Yun Tao, Yue-Ju Wang, Jeffrey L. Bennetzen, and Li-Zhi Gao
Completion of DNA replication in Escherichia coli
Brian M. Wendel, Charmain T. Courcelle, and Justin Courcelle
Immunology and Inflammation
Signaling pathways activated by a protease allergen in basophils
Rachel K. Rosenstein, Jelena S. Bezbradica, Shuang Yu, and Ruslan Medzhitov
EGR2 is critical for peripheral naïve T-cell differentiation and the T-cell response to influenza
Ning Du, Hyokjoon Kwon, Peng Li, Erin E. West, Jangsuk Oh, Wei Liao, Zuxi Yu, Min Ren, and Warren J. Leonard
Stable expression and function of the inositol 1,4,5-triphosphate receptor requires palmitoylation by a DHHC6/selenoprotein K complex
Gregory J. Fredericks, FuKun W. Hoffmann, Aaron H. Rose, Hanna J. Osterheld, Franz M. Hess, Frederic Mercier, and Peter R. Hoffmann
Interleukin 10 modulation of pathogenic Th17 cells during fatal alphavirus encephalomyelitis
Kirsten A. Kulcsar, Victoria K. Baxter, Ivorlyne P. Greene, and Diane E. Griffin
Single-cell mass cytometry of TCR signaling: Amplification of small initial differences results in low ERK activation in NOD mice
Michael Mingueneau, Smita Krishnaswamy, Matthew H. Spitzer, Sean C. Bendall, Erica L. Stone, Stephen M. Hedrick, Dana Pe'er, Diane Mathis, Garry P. Nolan, and Christophe Benoist
Medical Sciences
Forward genetic screens in mice uncover mediators and suppressors of metastatic reactivation
Hua Gao, Goutam Chakraborty, Ai Ping Lee-Lim, Konstantinos J. Mavrakis, Hans-Guido Wendel, and Filippo G. Giancotti
Osteoblast regulation via ligand-activated nuclear trafficking of the oxytocin receptor
Adriana Di Benedetto, Li Sun, Carlo G. Zambonin, Roberto Tamma, Beatrice Nico, Cosima D. Calvano, Graziana Colaianni, Yaoting Ji, Giorgio Mori, Maria Grano, Ping Lu, Silvia Colucci, Tony Yuen, Maria I. New, Alberta Zallone, and Mone Zaidi
Maresin 1 biosynthesis during platelet–neutrophil interactions is organ-protective
Raja-Elie E. Abdulnour, Jesmond Dalli, Jennifer K. Colby, Nandini Krishnamoorthy, Jack Y. Timmons, Sook Hwa Tan, Romain A. Colas, Nicos A. Petasis, Charles N. Serhan, and Bruce D. Levy
Cerebral small vessel disease-related protease HtrA1 processes latent TGF-β binding protein 1 and facilitates TGF-β signaling
Nathalie Beaufort, Eva Scharrer, Elisabeth Kremmer, Vanda Lux, Michael Ehrmann, Robert Huber, Henry Houlden, David Werring, Christof Haffner, and Martin Dichgans
Sex disparity in colonic adenomagenesis involves promotion by male hormones, not protection by female hormones Open Access Article
James M. Amos-Landgraf, Jarom Heijmans, Mattheus C. B. Wielenga, Elisa Dunkin, Kathy J. Krentz, Linda Clipson, Antwan G. Ederveen, Patrick G. Groothuis, Sietse Mosselman, Vanesa Muncan, Daniel W. Hommes, Alexandra Shedlovsky, William F. Dove, and Gijs R. van den Brink
Genetic activation of pyruvate dehydrogenase alters oxidative substrate selection to induce skeletal muscle insulin resistance Open Access Article
Yasmeen Rahimi, João-Paulo G. Camporez, Max C. Petersen, Dominik Pesta, Rachel J. Perry, Michael J. Jurczak, Gary W. Cline, and Gerald I. Shulman
Excess cholesterol induces mouse egg activation and may cause female infertility
Ayce Yesilaltay, Gregoriy A. Dokshin, Dolores Busso, Li Wang, Dalia Galiani, Tony Chavarria, Eliza Vasile, Linda Quilaqueo, Juan Andrés Orellana, Dalia Walzer, Ruth Shalgi, Nava Dekel, David F. Albertini, Attilio Rigotti, David C. Page, and Monty Krieger
Simple battery armor to protect against gastrointestinal injury from accidental ingestion
Bryan Laulicht, Giovanni Traverso, Vikram Deshpande, Robert Langer, and Jeffrey M. Karp
BID mediates selective killing of APC-deficient cells in intestinal tumor suppression by nonsteroidal antiinflammatory drugs
Brian Leibowitz, Wei Qiu, Monica E. Buchanan, Fangdong Zou, Philip Vernon, Mary P. Moyer, Xiao-Ming Yin, Robert E. Schoen, Jian Yu, and Lin Zhang
Bap1 is essential for kidney function and cooperates with Vhl in renal tumorigenesis Open Access Article
Shan-Shan Wang, Yi-Feng Gu, Nicholas Wolff, Karoliina Stefanius, Alana Christie, Anwesha Dey, Robert E. Hammer, Xian-Jin Xie, Dinesh Rakheja, Ivan Pedrosa, Thomas Carroll, Renée M. McKay, Payal Kapur, and James Brugarolas
Microbiology
Metabolic sensor governing bacterial virulence in Staphylococcus aureus
Yue Ding, Xing Liu, Feifei Chen, Hongxia Di, Bin Xu, Lu Zhou, Xin Deng, Min Wu, Cai-Guang Yang, and Lefu Lan
Single gene insertion drives bioalcohol production by a thermophilic archaeon
Mirko Basen, Gerrit J. Schut, Diep M. Nguyen, Gina L. Lipscomb, Robert A. Benn, Cameron J. Prybol, Brian J. Vaccaro, Farris L. Poole II, Robert M. Kelly, and Michael W. W. Adams
Neuroscience
SUMOylation at K340 inhibits tau degradation through deregulating its phosphorylation and ubiquitination
Hong-Bin Luo, Yi-Yuan Xia, Xi-Ji Shu, Zan-Chao Liu, Ye Feng, Xing-Hua Liu, Guang Yu, Gang Yin, Yan-Si Xiong, Kuan Zeng, Jun Jiang, Keqiang Ye, Xiao-Chuan Wang, and Jian-Zhi Wang
Spatial embedding of structural similarity in the cerebral cortex
H. Francis Song, Henry Kennedy, and Xiao-Jing Wang
Decreased segregation of brain systems across the healthy adult lifespan Open Access Article
Micaela Y. Chan, Denise C. Park, Neil K. Savalia, Steven E. Petersen, and Gagan S. Wig
Cannabinoid CB2 receptors modulate midbrain dopamine neuronal activity and dopamine-related behavior in mice Open Access Article
Hai-Ying Zhang, Ming Gao, Qing-Rong Liu, Guo-Hua Bi, Xia Li, Hong-Ju Yang, Eliot L. Gardner, Jie Wu, and Zheng-Xiong Xi
Anatomical accuracy of brain connections derived from diffusion MRI tractography is inherently limited
Cibu Thomas, Frank Q. Ye, M. Okan Irfanoglu, Pooja Modi, Kadharbatcha S. Saleem, David A. Leopold, and Carlo Pierpaoli
The MuSK activator agrin has a separate role essential for postnatal maintenance of neuromuscular synapses
Tohru Tezuka, Akane Inoue, Taisuke Hoshi, Scott D. Weatherbee, Robert W. Burgess, Ryo Ueta, and Yuji Yamanashi
RHGF-1/PDZ-RhoGEF and retrograde DLK-1 signaling drive neuronal remodeling on microtubule disassembly
Chun-Hao Chen, Albert Lee, Chien-Po Liao, Ya-Wen Liu, and Chun-Liang Pan
Pharmacology
Physiology
Decreased polycystin 2 expression alters calcium-contraction coupling and changes β-adrenergic signaling pathways
Ivana Y. Kuo, Andrea T. Kwaczala, Lily Nguyen, Kerry S. Russell, Stuart G. Campbell, and Barbara E. Ehrlich
Plant Biology
Nep1-like proteins from three kingdoms of life act as a microbe-associated molecular pattern in Arabidopsis
Stan Oome, Tom M. Raaymakers, Adriana Cabral, Simon Samwel, Hannah Böhm, Isabell Albert, Thorsten Nürnberger, and Guido Van den Ackerveken
Psychological and Cognitive Sciences
Overtone-based pitch selection in hermit thrush song: Unexpected convergence with scale construction in human music Open Access Article
Emily L. Doolittle, Bruno Gingras, Dominik M. Endres, and W. Tecumseh Fitch
Sustainability Science
New pasture plants intensify invasive species risk
Don A. Driscoll, Jane A. Catford, Jacob N. Barney, Philip E. Hulme, Inderjit, Tara G. Martin, Aníbal Pauchard, Petr Pyšek, David M. Richardson, Sophie Riley, and Vernon Visser
Systems Biology

Correction

Epigenetic Changes in the Developing Brain: Effects on Behavior Sackler Colloquium
Biological Sciences — Cell Biology
Biological Sciences — Developmental Biology
Notes on the role of dynamic DNA methylation in mammalian development
Timothy H. Bestor, John R. Edwards, and Mathieu Boulard
Biological Sciences — Genetics
Angelman syndrome imprinting center encodes a transcriptional promoter
Michael W. Lewis, Jason O. Brant, Joseph M. Kramer, James I. Moss, Thomas P. Yang, Peter Hansen, R. Stan Williams, and James L. Resnick

Epigenetic changes in the developing brain: Effects on behavior Sackler Colloquium
Biological Sciences — Developmental Biology
Open Access
From the Cover
Inaugural Article
Classic
Cozzarelli Prize Winner
Front Matter

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