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Fwd: PNAS Early Edition for 5 Nov 2015

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From: <pnas-mailer@alerts.highwire.org>
Date: Thu, Nov 5, 2015 at 11:13 PM
Subject: PNAS Early Edition for 5 Nov 2015
To: pascal.alter@gmail.com


PNAS    Proceedings of the National Academy of Sciences
Retrospective
Bill Paul: The heart of immunology
Michael J. Lenardo and Louis M. Staudt

Commentaries
Impact of bed capacity on spatiotemporal shifts in Ebola transmission
Jeffrey P. Townsend, Laura A. Skrip, and Alison P. Galvani
Settling the debate on birth order and personality
Rodica Ioana Damian and Brent W. Roberts

Physical Sciences
Applied Physical Sciences
Direct force measurements reveal that protein Tau confers short-range attractions and isoform-dependent steric stabilization to microtubules
Peter J. Chung, Myung Chul Choi, Herbert P. Miller, H. Eric Feinstein, Uri Raviv, Youli Li, Leslie Wilson, Stuart C. Feinstein, and Cyrus R. Safinya
Path selection in the growth of rivers
Yossi Cohen, Olivier Devauchelle, Hansjörg F. Seybold, Robert S. Yi, Piotr Szymczak, and Daniel H. Rothman
Chemistry
On artifacts in single-molecule force spectroscopy
Pilar Cossio, Gerhard Hummer, and Attila Szabo
Kinetics methods for clinical epidemiology problems
Alexandru Dan Corlan and John Ross
Single-molecule motions and interactions in live cells reveal target search dynamics in mismatch repair
Yi Liao, Jeremy W. Schroeder, Burke Gao, Lyle A. Simmons, and Julie S. Biteen
High-temperature in situ crystallographic observation of reversible gas sorption in impermeable organic cages Open Access Article
Seung Bin Baek, Dohyun Moon, Robert Graf, Woo Jong Cho, Sung Woo Park, Tae-Ung Yoon, Seung Joo Cho, In-Chul Hwang, Youn-Sang Bae, Hans W. Spiess, Hee Cheon Lee, and Kwang S. Kim
Computer Sciences
Automatic classification of prostate cancer Gleason scores from multiparametric magnetic resonance images Open Access Article
Duc Fehr, Harini Veeraraghavan, Andreas Wibmer, Tatsuo Gondo, Kazuhiro Matsumoto, Herbert Alberto Vargas, Evis Sala, Hedvig Hricak, and Joseph O. Deasy
Earth, Atmospheric, and Planetary Sciences
Seasonal fluxes of carbonyl sulfide in a midlatitude forest
Róisín Commane, Laura K. Meredith, Ian T. Baker, Joseph A. Berry, J. William Munger, Stephen A. Montzka, Pamela H. Templer, Stephanie M. Juice, Mark S. Zahniser, and Steven C. Wofsy
Fate of MgSiO3 melts at core–mantle boundary conditions Open Access Article
Sylvain Petitgirard, Wim J. Malfait, Ryosuke Sinmyo, Ilya Kupenko, Louis Hennet, Dennis Harries, Thomas Dane, Manfred Burghammer, and Dave C. Rubie
Formation and evolution of molecular products in α-pinene secondary organic aerosol
Xuan Zhang, Renee C. McVay, Dan D. Huang, Nathan F. Dalleska, Bernard Aumont, Richard C. Flagan, and John H. Seinfeld
Life and extinction of megafauna in the ice-age Arctic Open Access Article
Daniel H. Mann, Pamela Groves, Richard E. Reanier, Benjamin V. Gaglioti, Michael L. Kunz, and Beth Shapiro
Engineering
Stochastic electrotransport selectively enhances the transport of highly electromobile molecules
Sung-Yon Kim, Jae Hun Cho, Evan Murray, Naveed Bakh, Heejin Choi, Kimberly Ohn, Luzdary Ruelas, Austin Hubbert, Meg McCue, Sara L. Vassallo, Philipp J. Keller, and Kwanghun Chung
Ultrasensitive gas detection of large-area boron-doped graphene Open Access Article
Ruitao Lv, Gugang Chen, Qing Li, Amber McCreary, Andrés Botello-Méndez, S. V. Morozov, Liangbo Liang, Xavier Declerck, Nestor Perea-López, David A. Cullen, Simin Feng, Ana Laura Elías, Rodolfo Cruz-Silva, Kazunori Fujisawa, Morinobu Endo, Feiyu Kang, Jean-Christophe Charlier, Vincent Meunier, Minghu Pan, Avetik R. Harutyunyan, Konstantin S. Novoselov, and Mauricio Terrones
Environmental Sciences
Physics
Bright circularly polarized soft X-ray high harmonics for X-ray magnetic circular dichroism Open Access Article
Tingting Fan, Patrik Grychtol, Ronny Knut, Carlos Hernández-García, Daniel D. Hickstein, Dmitriy Zusin, Christian Gentry, Franklin J. Dollar, Christopher A. Mancuso, Craig W. Hogle, Ofer Kfir, Dominik Legut, Karel Carva, Jennifer L. Ellis, Kevin M. Dorney, Cong Chen, Oleg G. Shpyrko, Eric E. Fullerton, Oren Cohen, Peter M. Oppeneer, Dejan B. Milošević, Andreas Becker, Agnieszka A. Jaroń-Becker, Tenio Popmintchev, Margaret M. Murnane, and Henry C. Kapteyn
Filming the formation and fluctuation of skyrmion domains by cryo-Lorentz transmission electron microscopy Open Access Article
Jayaraman Rajeswari, Ping Huang, Giulia Fulvia Mancini, Yoshie Murooka, Tatiana Latychevskaia, Damien McGrouther, Marco Cantoni, Edoardo Baldini, Jonathan Stuart White, Arnaud Magrez, Thierry Giamarchi, Henrik Moodysson Rønnow, and Fabrizio Carbone
Twisted photon entanglement through turbulent air across Vienna
Mario Krenn, Johannes Handsteiner, Matthias Fink, Robert Fickler, and Anton Zeilinger
The bioenergetic costs of a gene
Michael Lynch and Georgi K. Marinov
Teleportation of entanglement over 143 km
Thomas Herbst, Thomas Scheidl, Matthias Fink, Johannes Handsteiner, Bernhard Wittmann, Rupert Ursin, and Anton Zeilinger

Social Sciences
Anthropology
Social Sciences

Biological Sciences
Applied Biological Sciences
Stochastic electrotransport selectively enhances the transport of highly electromobile molecules
Sung-Yon Kim, Jae Hun Cho, Evan Murray, Naveed Bakh, Heejin Choi, Kimberly Ohn, Luzdary Ruelas, Austin Hubbert, Meg McCue, Sara L. Vassallo, Philipp J. Keller, and Kwanghun Chung
Biochemistry
Structural basis for the binding of tryptophan-based motifs by δ-COP
Richard J. Suckling, Pak Phi Poon, Sophie M. Travis, Irina V. Majoul, Frederick M. Hughson, Philip R. Evans, Rainer Duden, and David J. Owen
Gating mechanisms of a natural anion channelrhodopsin
Oleg A. Sineshchekov, Elena G. Govorunova, Hai Li, and John L. Spudich
Biophysics and Computational Biology
Direct force measurements reveal that protein Tau confers short-range attractions and isoform-dependent steric stabilization to microtubules
Peter J. Chung, Myung Chul Choi, Herbert P. Miller, H. Eric Feinstein, Uri Raviv, Youli Li, Leslie Wilson, Stuart C. Feinstein, and Cyrus R. Safinya
On artifacts in single-molecule force spectroscopy
Pilar Cossio, Gerhard Hummer, and Attila Szabo
Electron cryotomography reveals ultrastructure alterations in platelets from patients with ovarian cancer Open Access Article
Rui Wang, Rebecca L. Stone, Jason T. Kaelber, Ryan H. Rochat, Alpa M. Nick, K. Vinod Vijayan, Vahid Afshar-Kharghan, Michael F. Schmid, Jing-Fei Dong, Anil K. Sood, and Wah Chiu
High-resolution structures of the M2 channel from influenza A virus reveal dynamic pathways for proton stabilization and transduction
Jessica L. Thomaston, Mercedes Alfonso-Prieto, Rahel A. Woldeyes, James S. Fraser, Michael L. Klein, Giacomo Fiorin, and William F. DeGrado
Single-molecule view of basal activity and activation mechanisms of the G protein-coupled receptor β2AR
Rajan Lamichhane, Jeffrey J. Liu, Goran Pljevaljcic, Kate L. White, Edwin van der Schans, Vsevolod Katritch, Raymond C. Stevens, Kurt Wüthrich, and David P. Millar
Direct real-time detection of the structural and biochemical events in the myosin power stroke
Joseph M. Muretta, John A. Rohde, Daniel O. Johnsrud, Sinziana Cornea, and David D. Thomas
Cell Biology
Telomeric repeat-containing RNA (TERRA) constitutes a nucleoprotein component of extracellular inflammatory exosomes Open Access Article
Zhuo Wang, Zhong Deng, Nadia Dahmane, Kevin Tsai, Pu Wang, Dewight R. Williams, Andrew V. Kossenkov, Louise C. Showe, Rugang Zhang, Qihong Huang, José R. Conejo-Garcia, and Paul M. Lieberman
Temperature compensation and temperature sensation in the circadian clock
Philip B. Kidd, Michael W. Young, and Eric D. Siggia
JAK inhibition alleviates the cellular senescence-associated secretory phenotype and frailty in old age Open Access Article
Ming Xu, Tamara Tchkonia, Husheng Ding, Mikolaj Ogrodnik, Ellen R. Lubbers, Tamar Pirtskhalava, Thomas A. White, Kurt O. Johnson, Michael B. Stout, Vojtech Mezera, Nino Giorgadze, Michael D. Jensen, Nathan K. LeBrasseur, and James L. Kirkland
Chronic centrosome amplification without tumorigenesis
Benjamin Vitre, Andrew J. Holland, Anita Kulukian, Ofer Shoshani, Maretoshi Hirai, Yin Wang, Marcus Maldonado, Thomas Cho, Jihane Boubaker, Deborah A. Swing, Lino Tessarollo, Sylvia M. Evans, Elaine Fuchs, and Don W. Cleveland
Epidermal development, growth control, and homeostasis in the face of centrosome amplification Open Access Article
Anita Kulukian, Andrew J. Holland, Benjamin Vitre, Shruti Naik, Don W. Cleveland, and Elaine Fuchs
PML IV/ARF interaction enhances p53 SUMO-1 conjugation, activation, and senescence
Lisa Ivanschitz, Yuki Takahashi, Florence Jollivet, Olivier Ayrault, Morgane Le Bras, and Hugues de Thé
Developmental Biology
The cerebral cavernous malformation proteins CCM2L and CCM2 prevent the activation of the MAP kinase MEKK3
Xavier Cullere, Eva Plovie, Paul M. Bennett, Calum A. MacRae, and Tanya N. Mayadas
Fourteen babies born after round spermatid injection into human oocytes Open Access Article
Atsushi Tanaka, Motoi Nagayoshi, Youichi Takemoto, Izumi Tanaka, Hiroshi Kusunoki, Seiji Watanabe, Keiji Kuroda, Satoru Takeda, Masahiko Ito, and Ryuzo Yanagimachi
Ecology
Persistent impacts of West Nile virus on North American bird populations
T. Luke George, Ryan J. Harrigan, Joseph A. LaManna, David F. DeSante, James F. Saracco, and Thomas B. Smith
Facilitation shifts paradigms and can amplify coastal restoration efforts Open Access Article
Brian R. Silliman, Elizabeth Schrack, Qiang He, Rebecca Cope, Amanda Santoni, Tjisse van der Heide, Ralph Jacobi, Mike Jacobi, and Johan van de Koppel
Fat, weather, and date affect migratory songbirds' departure decisions, routes, and time it takes to cross the Gulf of Mexico
Jill L. Deppe, Michael P. Ward, Rachel T. Bolus, Robert H. Diehl, Antonio Celis-Murillo, Theodore J. Zenzal Jr., Frank R. Moore, Thomas J. Benson, Jaclyn A. Smolinsky, Lynn N. Schofield, David A. Enstrom, Eben H. Paxton, Gil Bohrer, Tara A. Beveroth, Arlo Raim, Renee L. Obringer, David Delaney, and William W. Cochran
Environmental Sciences
Seasonal fluxes of carbonyl sulfide in a midlatitude forest
Róisín Commane, Laura K. Meredith, Ian T. Baker, Joseph A. Berry, J. William Munger, Stephen A. Montzka, Pamela H. Templer, Stephanie M. Juice, Mark S. Zahniser, and Steven C. Wofsy
Life and extinction of megafauna in the ice-age Arctic Open Access Article
Daniel H. Mann, Pamela Groves, Richard E. Reanier, Benjamin V. Gaglioti, Michael L. Kunz, and Beth Shapiro
Evolution
Community rescue in experimental metacommunities
Etienne Low-Décarie, Marcus Kolber, Paige Homme, Andrea Lofano, Alex Dumbrell, Andrew Gonzalez, and Graham Bell
The bioenergetic costs of a gene
Michael Lynch and Georgi K. Marinov
Genetics
Single-molecule motions and interactions in live cells reveal target search dynamics in mismatch repair
Yi Liao, Jeremy W. Schroeder, Burke Gao, Lyle A. Simmons, and Julie S. Biteen
Genome-wide redistribution of H3K27me3 is linked to genotoxic stress and defective growth
Evelina Y. Basenko, Takahiko Sasaki, Lexiang Ji, Cameron J. Prybol, Rachel M. Burckhardt, Robert J. Schmitz, and Zachary A. Lewis
Immunology and Inflammation
An anticomplement agent that homes to the damaged brain and promotes recovery after traumatic brain injury in mice Open Access Article
Marieta M. Ruseva, Valeria Ramaglia, B. Paul Morgan, and Claire L. Harris
Medical Sciences
Reduced DOCK4 expression leads to erythroid dysplasia in myelodysplastic syndromes Open Access Article
Sriram Sundaravel, Ryan Duggan, Tushar Bhagat, David L. Ebenezer, Hui Liu, Yiting Yu, Matthias Bartenstein, Madhu Unnikrishnan, Subhradip Karmakar, Ting-Chun Liu, Ingrid Torregroza, Thomas Quenon, John Anastasi, Kathy L. McGraw, Andrea Pellagatti, Jacqueline Boultwood, Vijay Yajnik, Andrew Artz, Michelle M. Le Beau, Ulrich Steidl, Alan F. List, Todd Evans, Amit Verma, and Amittha Wickrema
Kinetics methods for clinical epidemiology problems
Alexandru Dan Corlan and John Ross
Amino-terminal p53 mutations lead to expression of apoptosis proficient p47 and prognosticate better survival, but predispose to tumorigenesis Open Access Article
Beng Hooi Phang, Rashidah Othman, Gaelle Bougeard, Ren Hui Chia, Thierry Frebourg, Choong Leong Tang, Peh Yean Cheah, and Kanaga Sabapathy
Distinguishing the immunostimulatory properties of noncoding RNAs expressed in cancer cells Open Access Article
Antoine Tanne, Luciana R. Muniz, Anna Puzio-Kuter, Katerina I. Leonova, Andrei V. Gudkov, David T. Ting, Rémi Monasson, Simona Cocco, Arnold J. Levine, Nina Bhardwaj, and Benjamin D. Greenbaum
Role of vascular density and normalization in response to neoadjuvant bevacizumab and chemotherapy in breast cancer patients Open Access Article
Sara M. Tolaney, Yves Boucher, Dan G. Duda, John D. Martin, Giorgio Seano, Marek Ancukiewicz, William T. Barry, Shom Goel, Johanna Lahdenrata, Steven J. Isakoff, Eren D. Yeh, Saloni R. Jain, Mehra Golshan, Jane Brock, Matija Snuderl, Eric P. Winer, Ian E. Krop, and Rakesh K. Jain
Automatic classification of prostate cancer Gleason scores from multiparametric magnetic resonance images Open Access Article
Duc Fehr, Harini Veeraraghavan, Andreas Wibmer, Tatsuo Gondo, Kazuhiro Matsumoto, Herbert Alberto Vargas, Evis Sala, Hedvig Hricak, and Joseph O. Deasy
Pericentromeric satellite repeat expansions through RNA-derived DNA intermediates in cancer
Francesca Bersani, Eunjung Lee, Peter V. Kharchenko, Andrew W. Xu, Mingzhu Liu, Kristina Xega, Olivia C. MacKenzie, Brian W. Brannigan, Ben S. Wittner, Hyunchul Jung, Sridhar Ramaswamy, Peter J. Park, Shyamala Maheswaran, David T. Ting, and Daniel A. Haber
Microbiology
Bacterial clade with the ribosomal RNA operon on a small plasmid rather than the chromosome
Mizue Anda, Yoshiyuki Ohtsubo, Takashi Okubo, Masayuki Sugawara, Yuji Nagata, Masataka Tsuda, Kiwamu Minamisawa, and Hisayuki Mitsui
Virion-associated phosphatidylethanolamine promotes TIM1-mediated infection by Ebola, dengue, and West Nile viruses Open Access Article
Audrey Stéphanie Richard, Adam Zhang, Sun-Jin Park, Michael Farzan, Min Zong, and Hyeryun Choe
Deciphering tissue-induced Klebsiella pneumoniae lipid A structure
Enrique Llobet, Verónica Martínez-Moliner, David Moranta, Käthe M. Dahlström, Verónica Regueiro, Anna Tomás, Victoria Cano, Camino Pérez-Gutiérrez, Christian G. Frank, Helena Fernández-Carrasco, José Luis Insua, Tiina A. Salminen, Junkal Garmendia, and José A. Bengoechea
Evolutionary origins of hepatitis A virus in small mammals
Jan Felix Drexler, Victor M. Corman, Alexander N. Lukashev, Judith M. A. van den Brand, Anatoly P. Gmyl, Sebastian Brünink, Andrea Rasche, Nicole Seggewiβ, Hui Feng, Lonneke M. Leijten, Peter Vallo, Thijs Kuiken, Andreas Dotzauer, Rainer G. Ulrich, Stanley M. Lemon, Christian Drosten, and the Hepatovirus Ecology Consortium
Role of HIV-1 matrix protein p17 variants in lymphoma pathogenesis Open Access Article
Riccardo Dolcetti, Cinzia Giagulli, Wangxiao He, Marina Selleri, Francesca Caccuri, Lindsay M. Eyzaguirre, Pietro Mazzuca, Silvia Corbellini, Federica Campilongo, Stefania Marsico, Emanuela Giombini, Elena Muraro, Gabriella Rozera, Paolo De Paoli, Antonino Carbone, Maria Rosaria Capobianchi, Giuseppe Ippolito, Simona Fiorentini, William A. Blattner, Wuyuan Lu, Robert C. Gallo, and Arnaldo Caruso
Neuroscience
Diversity of sharp-wave–ripple LFP signatures reveals differentiated brain-wide dynamical events Open Access Article
Juan F. Ramirez-Villegas, Nikos K. Logothetis, and Michel Besserve
Development and aging of cortical thickness correspond to genetic organization patterns
Anders M. Fjell, Håkon Grydeland, Stine K. Krogsrud, Inge Amlien, Darius A. Rohani, Lia Ferschmann, Andreas B. Storsve, Christian K. Tamnes, Roser Sala-Llonch, Paulina Due-Tønnessen, Atle Bjørnerud, Anne Elisabeth Sølsnes, Asta K. Håberg, Jon Skranes, Hauke Bartsch, Chi-Hua Chen, Wesley K. Thompson, Matthew S. Panizzon, William S. Kremen, Anders M. Dale, and Kristine B. Walhovd
Physiology
Ryanodine receptor fragmentation and sarcoplasmic reticulum Ca2+ leak after one session of high-intensity interval exercise
Nicolas Place, Niklas Ivarsson, Tomas Venckunas, Daria Neyroud, Marius Brazaitis, Arthur J. Cheng, Julien Ochala, Sigitas Kamandulis, Sebastien Girard, Gintautas Volungevičius, Henrikas Paužas, Abdelhafid Mekideche, Bengt Kayser, Vicente Martinez-Redondo, Jorge L. Ruas, Joseph Bruton, Andre Truffert, Johanna T. Lanner, Albertas Skurvydas, and Håkan Westerblad
Maternal testosterone exposure increases anxiety-like behavior and impacts the limbic system in the offspring Open Access Article
Min Hu, Jennifer Elise Richard, Manuel Maliqueo, Milana Kokosar, Romina Fornes, Anna Benrick, Thomas Jansson, Claes Ohlsson, Xiaoke Wu, Karolina Patrycja Skibicka, and Elisabet Stener-Victorin
Plant Biology
Plant Raf-like kinase integrates abscisic acid and hyperosmotic stress signaling upstream of SNF1-related protein kinase2 Open Access Article
Masashi Saruhashi, Totan Kumar Ghosh, Kenta Arai, Yumiko Ishizaki, Kazuya Hagiwara, Kenji Komatsu, Yuh Shiwa, Keiichi Izumikawa, Harunori Yoshikawa, Taishi Umezawa, Yoichi Sakata, and Daisuke Takezawa
Hormone-regulated defense and stress response networks contribute to heterosis in Arabidopsis F1 hybrids Open Access Article
Michael Groszmann, Rebeca Gonzalez-Bayon, Rebecca L. Lyons, Ian K. Greaves, Kemal Kazan, W. James Peacock, and Elizabeth S. Dennis
Unique COPII component AtSar1a/AtSec23a pair is required for the distinct function of protein ER export in Arabidopsis thaliana
Yonglun Zeng, Kin Pan Chung, Baiying Li, Ching Man Lai, Sheung Kwan Lam, Xiangfeng Wang, Yong Cui, Caiji Gao, Ming Luo, Kam-Bo Wong, Randy Schekman, and Liwen Jiang
Host target modification as a strategy to counter pathogen hijacking of the jasmonate hormone receptor
Li Zhang, Jian Yao, John Withers, Xiu-Fang Xin, Rahul Banerjee, Qazi Fariduddin, Yoko Nakamura, Kinya Nomura, Gregg A. Howe, Wilhelm Boland, Honggao Yan, and Sheng Yang He
Psychological and Cognitive Sciences
Sustainability Science
An analysis of ozone damage to historical maize and soybean yields in the United States Open Access Article
Justin M. McGrath, Amy M. Betzelberger, Shaowen Wang, Eric Shook, Xin-Guang Zhu, Stephen P. Long, and Elizabeth A. Ainsworth

Corrections

SI Correction
Open Access
From the Cover
Inaugural Article
Classic
Cozzarelli Prize Winner
Front Matter

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