Notatnik Pascala: Fwd: PNAS Early Edition for 7 May 2013

---------- Forwarded message ----------
From: <pnas-mailer@alerts.stanford.edu>
Date: Wed, May 8, 2013 at 7:27 AM
Subject: PNAS Early Edition for 7 May 2013
To: pascal.alter@gmail.com

Proceedings of the National Academy of Sciences

Early Edition articles for 7 May 2013

Letters (Online Only)

Growth differentiation factor 9:bone morphogenetic protein 15 (GDF9:BMP15) synergism and protein heterodimerization: David G. Mottershead, Craig A. Harrison, Thomas D. Mueller, Peter G. Stanton, Robert B. Gilchrist, and Kenneth P. McNatty

Reply to Mottershead et al.: GDF9:BMP15 heterodimers are potent regulators of ovarian functions: Jia Peng, Qinglei Li, Karen Wigglesworth, Adithya Rangarajan, Chandramohan Kattamuri, Randall T. Peterson, John J. Eppig, Thomas B. Thompson, and Martin M. Matzuk

Biomineralization toolkit: The importance of sample cleaning prior to the characterization of biomineral proteomes: Paula Ramos-Silva, Frédéric Marin, Jaap Kaandorp, and Benjamin Marie

Reply to Ramos-Silva et al.: Regarding coral skeletal proteome: Jeana L. Drake, Tali Mass, Liti Haramaty, Ehud Zelzion, Debashish Bhattacharya, and Paul G. Falkowski

QnAs

QnAs with Randolph Blake: Beth Azar

Profile

Profile of Vivian W.-W. Yam: Farooq Ahmed

Commentaries

History, novelty, and emergence of an infectious amphibian disease: James P. Collins

Weather and anomalous heat flow occurring near absolute zero: Joseph J. Niemela

Healing power of honey: Walter S. Leal

Perspective

Climate change frames debate over the extinction of megafauna in Sahul (Pleistocene Australia-New Guinea): Stephen Wroe, Judith H. Field, Michael Archer, Donald K. Grayson, Gilbert J. Price, Julien Louys, J. Tyler Faith, Gregory E. Webb, Iain Davidson, and Scott D. Mooney

Chemistry and Applications in Nature of Mass Independent Isotope Effects Special Feature

Physical Sciences — Earth, Atmospheric, and Planetary Sciences

Modeling nuclear volume isotope effects in crystals: Edwin A. Schauble

Physical Sciences

Applied Mathematics

A Huygens principle for diffusion and anomalous diffusion in spatially extended systems: Georg A. Gottwald and Ian Melbourne

The phase transition of matrix recovery from Gaussian measurements matches the minimax MSE of matrix denoising OPEN ACCESS ARTICLE: David L. Donoho, Matan Gavish, and Andrea Montanari

True scale-invariant random spatial networks: David Aldous and Karthik Ganesan

Applied Physical Sciences

Fluorescence thermometry enhanced by the quantum coherence of single spins in diamond OPEN ACCESS ARTICLE: David M. Toyli, Charles F. de las Casas, David J. Christle, Viatcheslav V. Dobrovitski, and David D. Awschalom

Control of slippage with tunable bubble mattresses OPEN ACCESS ARTICLE: Elif Karatay, A. Sander Haase, Claas Willem Visser, Chao Sun, Detlef Lohse, Peichun Amy Tsai, and Rob G. H. Lammertink

Chemistry

Optimal fold symmetry of LH2 rings on a photosynthetic membrane: Liam Cleary, Hang Chen, Chern Chuang, Robert J. Silbey, and Jianshu Cao

Direct observation of intermediates formed during steady-state electrocatalytic O₂ reduction by iron porphyrins: Kushal Sengupta, Sudipta Chatterjee, Subhra Samanta, and Abhishek Dey

Study of the fluoro- and chlorodimethylbutyl cations: George A. Olah, G. K. Surya Prakash, and Golam Rasul

Salts drive controllable multilayered upright assembly of amyloid-like peptides at mica/water interface OPEN ACCESS ARTICLE: Bin Dai, Seung-gu Kang, Tien Huynh, Haozhi Lei, Matteo Castelli, Jun Hu, Yi Zhang, and Ruhong Zhou

Earth, Atmospheric, and Planetary Sciences

Persistence and origin of the lunar core dynamo: Clément Suavet, Benjamin P. Weiss, William S. Cassata, David L. Shuster, Jérôme Gattacceca, Lindsey Chan, Ian Garrick-Bethell, James W. Head, Timothy L. Grove, and Michael D. Fuller

Sulfur isotopes in coal constrain the evolution of the Phanerozoic sulfur cycle: Donald E. Canfield

Engineering

Biopolymer-reinforced synthetic granular nanocomposites for affordable point-of-use water purification: Mohan Udhaya Sankar, Sahaja Aigal, Shihabudheen M. Maliyekkal, Amrita Chaudhary, Anshup, Avula Anil Kumar, Kamalesh Chaudhari, and Thalappil Pradeep

Lymphatic abnormalities are associated with RASA1 gene mutations in mouse and man: Patricia E. Burrows, Manuel L. Gonzalez-Garay, John C. Rasmussen, Melissa B. Aldrich, Renie Guilliod, Erik A. Maus, Caroline E. Fife, Sunkuk Kwon, Philip E. Lapinski, Philip D. King, and Eva M. Sevick-Muraca

Social Sciences

Psychological and Cognitive Sciences

Rational integration of noisy evidence and prior semantic expectations in sentence interpretation: Edward Gibson, Leon Bergen, and Steven T. Piantadosi

Biological Sciences

Agricultural Sciences

Retargeting of the Bacillus thuringiensis toxin Cyt2Aa against hemipteran insect pests: Nanasaheb P. Chougule, Huarong Li, Sijun Liu, Lucas B. Linz, Kenneth E. Narva, Thomas Meade, and Bryony C. Bonning

Anthropology

Ultraconserved words point to deep language ancestry across Eurasia OPEN ACCESS ARTICLE: Mark Pagel, Quentin D. Atkinson, Andreea S. Calude, and Andrew Meade

Applied Biological Sciences

Specialized bat tongue is a hemodynamic nectar mop: Cally J. Harper, Sharon M. Swartz, and Elizabeth L. Brainerd

Flow induces epithelial-mesenchymal transition, cellular heterogeneity and biomarker modulation in 3D ovarian cancer nodules: Imran Rizvi, Umut A. Gurkan, Savas Tasoglu, Nermina Alagic, Jonathan P. Celli, Lawrence B. Mensah, Zhiming Mai, Utkan Demirci, and Tayyaba Hasan

Biochemistry

The posttranslational modification cascade to the thiopeptide berninamycin generates linear forms and altered macrocyclic scaffolds: Steven J. Malcolmson, Travis S. Young, J. Graham Ruby, Peter Skewes-Cox, and Christopher T. Walsh

CaBP1, a neuronal Ca²⁺ sensor protein, inhibits inositol trisphosphate receptors by clamping intersubunit interactions OPEN ACCESS ARTICLE: Congmin Li, Masahiro Enomoto, Ana M. Rossi, Min-Duk Seo, Taufiq Rahman, Peter B. Stathopulos, Colin W. Taylor, Mitsuhiko Ikura, and James B. Ames

Structural snapshots reveal distinct mechanisms of procaspase-3 and -7 activation OPEN ACCESS ARTICLE: Nathan D. Thomsen, James T. Koerber, and James A. Wells

X-ray structure of an AdoMet radical activase reveals an anaerobic solution for formylglycine posttranslational modification: Peter J. Goldman, Tyler L. Grove, Lauren A. Sites, Martin I. McLaughlin, Squire J. Booker, and Catherine L. Drennan

Heterochromatin protein Sir3 induces contacts between the amino terminus of histone H4 and nucleosomal DNA OPEN ACCESS ARTICLE: Feng Wang, Geng Li, Mohammed Altaf, Chenning Lu, Mark A. Currie, Aaron Johnson, and Danesh Moazed

Heat shock protein (Hsp) 70 is an activator of the Hsp104 motor: Jungsoon Lee, Ji-Hyun Kim, Amadeo B. Biter, Bernhard Sielaff, Sukyeong Lee, and Francis T. F. Tsai

Mycobacterial toxin MazF-mt6 inhibits translation through cleavage of 23S rRNA at the ribosomal A site: Jason M. Schifano, Regina Edifor, Jared D. Sharp, Ming Ouyang, Arvind Konkimalla, Robert N. Husson, and Nancy A. Woychik

Phosphorylation-dependent conformational changes and domain rearrangements in Staphylococcus aureus VraR activation: Paul G. Leonard, Dasantila Golemi-Kotra, and Ann M. Stock

Chloride binding site of neurotransmitter sodium symporters: Adriana K. Kantcheva, Matthias Quick, Lei Shi, Anne-Marie Lund Winther, Sebastian Stolzenberg, Harel Weinstein, Jonathan A. Javitch, and Poul Nissen

Biophysics and Computational Biology

Structural plasticity of the cellular prion protein and implications in health and disease: Barbara Christen, Fred F. Damberger, Daniel R. Pérez, Simone Hornemann, and Kurt Wüthrich

Optimal fold symmetry of LH2 rings on a photosynthetic membrane: Liam Cleary, Hang Chen, Chern Chuang, Robert J. Silbey, and Jianshu Cao

Salts drive controllable multilayered upright assembly of amyloid-like peptides at mica/water interface OPEN ACCESS ARTICLE: Bin Dai, Seung-gu Kang, Tien Huynh, Haozhi Lei, Matteo Castelli, Jun Hu, Yi Zhang, and Ruhong Zhou

Cell Biology

Evidence for orphan nuclear receptor TR4 in the etiology of Cushing disease OPEN ACCESS ARTICLE: Li Du, Marvin Bergsneider, Leili Mirsadraei, Steven H. Young, Johan W. Jonker, Michael Downes, William H. Yong, Ronald M. Evans, and Anthony P. Heaney

Structural basis of the relaxed state of a Ca²⁺-regulated myosin filament and its evolutionary implications: John L. Woodhead, Fa-Qing Zhao, and Roger Craig

Cross-talk between MET and EGFR in non-small cell lung cancer involves miR-27a and Sprouty2 OPEN ACCESS ARTICLE: Mario Acunzo, Giulia Romano, Dario Palmieri, Alessandro Laganá, Michela Garofalo, Veronica Balatti, Alessandra Drusco, Mario Chiariello, Patrick Nana-Sinkam, and Carlo M. Croce

Visualizing cellular interactions with a generalized proximity reporter: Mark A. Sellmyer, Laura Bronsart, Hiroshi Imoto, Christopher H. Contag, Thomas J. Wandless, and Jennifer A. Prescher

Dynamic gradients of an intermediate filament-like cytoskeleton are recruited by a polarity landmark during apical growth OPEN ACCESS ARTICLE: Katsuya Fuchino, Sonchita Bagchi, Stuart Cantlay, Linda Sandblad, Di Wu, Jessica Bergman, Masood Kamali-Moghaddam, Klas Flärdh, and Nora Ausmees

Developmental Biology

Kif7 is required for the patterning and differentiation of the diaphragm in a model of syndromic congenital diaphragmatic hernia: Garry L. Coles and Kate G. Ackerman

Gene regulatory network for neurogenesis in a sea star embryo connects broad neural specification and localized patterning: Kristen A. Yankura, Claire S. Koechlein, Abigail F. Cryan, Alys Cheatle, and Veronica F. Hinman

Environmental Sciences

Evolution of the plankton paleome in the Black Sea from the Deglacial to Anthropocene: Marco J. L. Coolen, William D. Orsi, Cherel Balkema, Christopher Quince, Keith Harris, Sean P. Sylva, Mariana Filipova-Marinova, and Liviu Giosan

Evolution

Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data OPEN ACCESS ARTICLE: Erica Bree Rosenblum, Timothy Y. James, Kelly R. Zamudio, Thomas J. Poorten, Dan Ilut, David Rodriguez, Jonathan M. Eastman, Katy Richards-Hrdlicka, Suzanne Joneson, Thomas S. Jenkinson, Joyce E. Longcore, Gabriela Parra Olea, Luís Felipe Toledo, Maria Luz Arellano, Edgar M. Medina, Silvia Restrepo, Sandra Victoria Flechas, Lee Berger, Cheryl J. Briggs, and Jason E. Stajich

Frequent adaptation and the McDonald–Kreitman test OPEN ACCESS ARTICLE: Philipp W. Messer and Dmitri A. Petrov

Diversity, host switching and evolution of Plasmodium vivax infecting African great apes: Franck Prugnolle, Virginie Rougeron, Pierre Becquart, Antoine Berry, Boris Makanga, Nil Rahola, Céline Arnathau, Barthélémy Ngoubangoye, Sandie Menard, Eric Willaume, Francisco J. Ayala, Didier Fontenille, Benjamin Ollomo, Patrick Durand, Christophe Paupy, and François Renaud

Genetics

Mesenchymal glioma stem cells are maintained by activated glycolytic metabolism involving aldehyde dehydrogenase 1A3 OPEN ACCESS ARTICLE: Ping Mao, Kaushal Joshi, Jianfeng Li, Sung-Hak Kim, Peipei Li, Lucas Santana-Santos, Soumya Luthra, Uma R. Chandran, Panayiotis V. Benos, Luke Smith, Maode Wang, Bo Hu, Shi-Yuan Cheng, Robert W. Sobol, and Ichiro Nakano

Lymphatic abnormalities are associated with RASA1 gene mutations in mouse and man: Patricia E. Burrows, Manuel L. Gonzalez-Garay, John C. Rasmussen, Melissa B. Aldrich, Renie Guilliod, Erik A. Maus, Caroline E. Fife, Sunkuk Kwon, Philip E. Lapinski, Philip D. King, and Eva M. Sevick-Muraca

Parkin overexpression during aging reduces proteotoxicity, alters mitochondrial dynamics, and extends lifespan: Anil Rana, Michael Rera, and David W. Walker

Dnmt2-dependent methylomes lack defined DNA methylation patterns: Günter Raddatz, Paloma M. Guzzardo, Nelly Olova, Marcelo Rosado Fantappié, Markus Rampp, Matthias Schaefer, Wolf Reik, Gregory J. Hannon, and Frank Lyko

Immunology

Stat2 loss leads to cytokine-independent, cell-mediated lethality in LPS-induced sepsis: William Alazawi, Helen Heath, Jennifer A. Waters, Abigail Woodfin, Alastair J. O'Brien, Anthony J. Scarzello, Bin Ma, Yolanda Lopez-Otalora, Michael Jacobs, Gemma Petts, Robert D. Goldin, Sussan Nourshargh, Ana M. Gamero, and Graham R. Foster

Motile invaded neutrophils in the small intestine of Toxoplasma gondii-infected mice reveal a potential mechanism for parasite spread OPEN ACCESS ARTICLE: Janine L. Coombes, Brittany A. Charsar, Seong-Ji Han, Joanna Halkias, Shiao Wei Chan, Anita A. Koshy, Boris Striepen, and Ellen A. Robey

Expression of recombinant human complement C1q allows identification of the C1r/C1s-binding sites: Isabelle Bally, Sarah Ancelet, Christine Moriscot, Florence Gonnet, Alberto Mantovani, Régis Daniel, Guy Schoehn, Gérard J. Arlaud, and Nicole M. Thielens

Peptide library-based evaluation of T-cell receptor breadth detects defects in global and regulatory activation in human immunologic diseases: John S. Barber, Lauren K. Yokomizo, Virginia Sheikh, Alexandra F. Freeman, Elizabeth Garabedian, Evert van Dijk, Robert Sokolic, Fabio Candotti, Nan-ping Weng, Irini Sereti, and Joshua D. Milner

IL-15 in tumor microenvironment causes rejection of large established tumors by T cells in a noncognate T cell receptor-dependent manner: Rebecca Berlant Liu, Boris Engels, Karin Schreiber, Cezary Ciszewski, Andrea Schietinger, Hans Schreiber, and Bana Jabri

Medical Sciences

Engineering bone tissue substitutes from human induced pluripotent stem cells: Giuseppe Maria de Peppo, Iván Marcos-Campos, David John Kahler, Dana Alsalman, Linshan Shang, Gordana Vunjak-Novakovic, and Darja Marolt

Neutrophil histone modification by peptidylarginine deiminase 4 is critical for deep vein thrombosis in mice: Kimberly Martinod, Melanie Demers, Tobias A. Fuchs, Siu Ling Wong, Alexander Brill, Maureen Gallant, Jing Hu, Yanming Wang, and Denisa D. Wagner

Endothelial TLR4 activation impairs intestinal microcirculatory perfusion in necrotizing enterocolitis via eNOS–NO–nitrite signaling: Ibrahim Yazji, Chhinder P. Sodhi, Elizabeth K. Lee, Misty Good, Charlotte E. Egan, Amin Afrazi, Matthew D. Neal, Hongpeng Jia, Joyce Lin, Congrong Ma, Maria F. Branca, Thomas Prindle, Ward M. Richardson, John Ozolek, Timothy R. Billiar, David G. Binion, Mark T. Gladwin, and David J. Hackam

Farnesylation of lamin B1 is important for retention of nuclear chromatin during neuronal migration: Hea-Jin Jung, Chika Nobumori, Chris N. Goulbourne, Yiping Tu, John M. Lee, Angelica Tatar, Daniel Wu, Yuko Yoshinaga, Pieter J. de Jong, Catherine Coffinier, Loren G. Fong, and Stephen G. Young

Transcytosis and brain uptake of transferrin-containing nanoparticles by tuning avidity to transferrin receptor OPEN ACCESS ARTICLE: Devin T. Wiley, Paul Webster, Aaron Gale, and Mark E. Davis

Dynamic vaccine blocks relapse to compulsive intake of heroin: Joel E. Schlosburg, Leandro F. Vendruscolo, Paul T. Bremer, Jonathan W. Lockner, Carrie L. Wade, Ashlee A. K. Nunes, G. Neil Stowe, Scott Edwards, Kim D. Janda, and George F. Koob

Microbiology

Mechanism for nitrogen isotope fractionation during ammonium assimilation by Escherichia coli K12: Jason Vo, William Inwood, John M. Hayes, and Sydney Kustu

Combined effect of a peptide–morpholino oligonucleotide conjugate and a cell-penetrating peptide as an antibiotic: Donna Wesolowski, Dulce Alonso, and Sidney Altman

Neuroscience

Role for the kinase SGK1 in stress, depression, and glucocorticoid effects on hippocampal neurogenesis OPEN ACCESS ARTICLE: Christoph Anacker, Annamaria Cattaneo, Ksenia Musaelyan, Patricia A. Zunszain, Mark Horowitz, Raffaella Molteni, Alessia Luoni, Francesca Calabrese, Katherine Tansey, Massimo Gennarelli, Sandrine Thuret, Jack Price, Rudolf Uher, Marco A. Riva, and Carmine M. Pariante

Impaired learning resulting from Respiratory Syncytial Virus infection: Janyra A. Espinoza, Karen Bohmwald, Pablo F. Céspedes, Roberto S. Gómez, Sebastián A. Riquelme, Claudia M. Cortés, Javier A. Valenzuela, Rodrigo A. Sandoval, Floria C. Pancetti, Susan M. Bueno, Claudia A. Riedel, and Alexis M. Kalergis

Presynaptic maturation in auditory hair cells requires a critical period of sensory-independent spiking activity OPEN ACCESS ARTICLE: Stuart L. Johnson, Stephanie Kuhn, Christoph Franz, Neil Ingham, David N. Furness, Marlies Knipper, Karen P. Steel, John P. Adelman, Matthew C. Holley, and Walter Marcotti

Activated microglia enhance neurogenesis via trypsinogen secretion: Angeliki M. Nikolakopoulou, Ranjan Dutta, Zhihong Chen, Robert H. Miller, and Bruce D. Trapp

Global view of the evolution and diversity of metazoan neuropeptide signaling OPEN ACCESS ARTICLE: Gáspár Jékely

Pharmacology

Dynamic subunit stoichiometry confers a progressive continuum of pharmacological sensitivity by KCNQ potassium channels OPEN ACCESS ARTICLE: Haibo Yu, Zhihong Lin, Margrith E. Mattmann, Beiyan Zou, Cecile Terrenoire, Hongkang Zhang, Meng Wu, Owen B. McManus, Robert S. Kass, Craig W. Lindsley, Corey R. Hopkins, and Min Li

Phosphatidylinositol 4,5-bisphosphate alters pharmacological selectivity for epilepsy-causing KCNQ potassium channels OPEN ACCESS ARTICLE: Pingzheng Zhou, Haibo Yu, Min Gu, Fa-jun Nan, Zhaobing Gao, and Min Li

Physiology

Skeletal muscle PGC-1α controls whole-body lactate homeostasis through estrogen-related receptor α-dependent activation of LDH B and repression of LDH A: Serge Summermatter, Gesa Santos, Joaquín Pérez-Schindler, and Christoph Handschin

Chloride transport-driven alveolar fluid secretion is a major contributor to cardiogenic lung edema: Esther A. Solymosi, Stefanie M. Kaestle-Gembardt, István Vadász, Liming Wang, Nils Neye, Cécile Julie Adrienne Chupin, Simon Rozowsky, Ramona Ruehl, Arata Tabuchi, Holger Schulz, Andras Kapus, Rory E. Morty, and Wolfgang M. Kuebler

Plant Biology

Calcium-dependent protein kinase/NADPH oxidase activation circuit is required for rapid defense signal propagation OPEN ACCESS ARTICLE: Ullrich Dubiella, Heike Seybold, Guido Durian, Eileen Komander, Roman Lassig, Claus-Peter Witte, Waltraud X. Schulze, and Tina Romeis

WRKY8 transcription factor functions in the TMV-cg defense response by mediating both abscisic acid and ethylene signaling in Arabidopsis: Ligang Chen, Liping Zhang, Daibo Li, Fang Wang, and Diqiu Yu

DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV: Heng Zhang, Ze-Yang Ma, Liang Zeng, Kaori Tanaka, Cui-Jun Zhang, Jun Ma, Ge Bai, Pengcheng Wang, Su-Wei Zhang, Zhang-Wei Liu, Tao Cai, Kai Tang, Renyi Liu, Xiaobing Shi, Xin-Jian He, and Jian-Kang Zhu

Population Biology

Interventions for avian influenza A (H5N1) risk management in live bird market networks OPEN ACCESS ARTICLE: Guillaume Fournié, Javier Guitian, Stéphanie Desvaux, Vu Chi Cuong, Do Huu Dung, Dirk Udo Pfeiffer, Punam Mangtani, and Azra C. Ghani

Corrections