wtorek, 21 kwietnia 2015

Fwd: PNAS Table of Contents for 21 April 2015; Vol. 112, No. 16


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Date: Tue, Apr 21, 2015 at 11:56 PM
Subject: PNAS Table of Contents for 21 April 2015; Vol. 112, No. 16
To: pascal.alter@gmail.com


PNAS    Proceedings of the National Academy of Sciences

Interested in the challenges of sustainability?
This Week in PNAS

Letters (Online Only)
LQT1-phenotypes in hiPSC: Are we measuring the right thing?
Torsten Christ, András Horvath, and Thomas Eschenhagen
Reply to Christ et al.: LQT1 and JLNS phenotypes in hiPSC-derived cardiomyocytes are due to KCNQ1 mutations
Boris Greber, Arie O. Verkerk, Guiscard Seebohm, Christine L. Mummery, and Milena Bellin
Caveats about interpretation of ancient chicken mtDNAs from northern China
Min-Sheng Peng, Ni-Ni Shi, Yong-Gang Yao, and Ya-Ping Zhang

Core Concepts
A brief introduction to emerging topics in science.

Commentaries

PNAS Plus Significance Statements
Brief statements written by the authors about the significance of their papers.

Future of the Fossil Record Special Feature (Free Online)
Introduction
Perspectives
Neither chimpanzee nor human, Ardipithecus reveals the surprising ancestry of both
Tim D. White, C. Owen Lovejoy, Berhane Asfaw, Joshua P. Carlson, and Gen Suwa
Biological Sciences — Evolution
Organogenesis in deep time: A problem in genomics, development, and paleontology
Joyce Pieretti, Andrew R. Gehrke, Igor Schneider, Noritaka Adachi, Tetsuya Nakamura, and Neil H. Shubin
Biological Sciences — Evolution - Physical Sciences — Earth, Atmospheric, and Planetary Sciences
The advent of animals: The view from the Ediacaran
Mary L. Droser and James G. Gehling
Biological Sciences — Evolution - Physical Sciences — Environmental Sciences
Physical Sciences — Earth, Atmospheric, and Planetary Sciences
Changing the picture of Earth's earliest fossils (3.5–1.9 Ga) with new approaches and new discoveries
Martin D. Brasier, Jonathan Antcliffe, Martin Saunders, and David Wacey

Physical Sciences
Applied Mathematics
Applied Physical Sciences
Mechanical cloak design by direct lattice transformation
Tiemo Bückmann, Muamer Kadic, Robert Schittny, and Martin Wegener
Chemistry
Base-enhanced catalytic water oxidation by a carboxylate–bipyridine Ru(II) complex
Na Song, Javier J. Concepcion, Robert A. Binstead, Jennifer A. Rudd, Aaron K. Vannucci, Christopher J. Dares, Michael K. Coggins, and Thomas J. Meyer
Mimicking the magnetic properties of rare earth elements using superatoms Open Access Article
Shi-Bo Cheng, Cuneyt Berkdemir, and A. W. Castleman Jr.
Mechanisms of hematin crystallization and inhibition by the antimalarial drug chloroquine
Katy N. Olafson, Megan A. Ketchum, Jeffrey D. Rimer, and Peter G. Vekilov
Ideal probe single-molecule experiments reveal the intrinsic dynamic heterogeneity of a supercooled liquid From the Cover
Keewook Paeng, Heungman Park, Dat Tien Hoang, and Laura J. Kaufman
A modular toolkit to inhibit proline-rich motif–mediated protein–protein interactions Open Access Article
Robert Opitz, Matthias Müller, Cédric Reuter, Matthias Barone, Arne Soicke, Yvette Roske, Kirill Piotukh, Peter Huy, Monika Beerbaum, Burkhard Wiesner, Michael Beyermann, Peter Schmieder, Christian Freund, Rudolf Volkmer, Hartmut Oschkinat, Hans-Günther Schmalz, and Ronald Kühne
Earth, Atmospheric, and Planetary Sciences
Metallic lead nanospheres discovered in ancient zircons
Monika A. Kusiak, Daniel J. Dunkley, Richard Wirth, Martin J. Whitehouse, Simon A. Wilde, and Katharina Marquardt
Engineering
High-yield hydrogen production from biomass by in vitro metabolic engineering: Mixed sugars coutilization and kinetic modeling Open Access Article
Joseph A. Rollin, Julia Martin del Campo, Suwan Myung, Fangfang Sun, Chun You, Allison Bakovic, Roberto Castro, Sanjeev K. Chandrayan, Chang-Hao Wu, Michael W. W. Adams, Ryan S. Senger, and Y.-H. Percival Zhang
Acoustic separation of circulating tumor cells Open Access Article
Peng Li, Zhangming Mao, Zhangli Peng, Lanlan Zhou, Yuchao Chen, Po-Hsun Huang, Cristina I. Truica, Joseph J. Drabick, Wafik S. El-Deiry, Ming Dao, Subra Suresh, and Tony Jun Huang
New functional insights into the internal architecture of the laminated anchor spicules of Euplectella aspergillum
Michael A. Monn, James C. Weaver, Tianyang Zhang, Joanna Aizenberg, and Haneesh Kesari
Stoichiometric control of DNA-grafted colloid self-assembly
Thi Vo, Venkat Venkatasubramanian, Sanat Kumar, Babji Srinivasan, Suchetan Pal, Yugang Zhang, and Oleg Gang
Physics
A new regime of nanoscale thermal transport: Collective diffusion increases dissipation efficiency Open Access Article Inaugural Article
Kathleen M. Hoogeboom-Pot, Jorge N. Hernandez-Charpak, Xiaokun Gu, Travis D. Frazer, Erik H. Anderson, Weilun Chao, Roger W. Falcone, Ronggui Yang, Margaret M. Murnane, Henry C. Kapteyn, and Damiano Nardi

Social Sciences
Psychological and Cognitive Sciences
Identity-specific coding of future rewards in the human orbitofrontal cortex
James D. Howard, Jay A. Gottfried, Philippe N. Tobler, and Thorsten Kahnt
Social Sciences
The human sex ratio from conception to birth Open Access Article From the Cover
Steven Hecht Orzack, J. William Stubblefield, Viatcheslav R. Akmaev, Pere Colls, Santiago Munné, Thomas Scholl, David Steinsaltz, and James E. Zuckerman
Effect of neighborhood stigma on economic transactions
Max Besbris, Jacob William Faber, Peter Rich, and Patrick Sharkey
Sustainability Science

Biological Sciences
Applied Biological Sciences
High-yield hydrogen production from biomass by in vitro metabolic engineering: Mixed sugars coutilization and kinetic modeling Open Access Article
Joseph A. Rollin, Julia Martin del Campo, Suwan Myung, Fangfang Sun, Chun You, Allison Bakovic, Roberto Castro, Sanjeev K. Chandrayan, Chang-Hao Wu, Michael W. W. Adams, Ryan S. Senger, and Y.-H. Percival Zhang
Biochemistry
Panoramic view of a superfamily of phosphatases through substrate profiling
Hua Huang, Chetanya Pandya, Chunliang Liu, Nawar F. Al-Obaidi, Min Wang, Li Zheng, Sarah Toews Keating, Miyuki Aono, James D. Love, Brandon Evans, Ronald D. Seidel, Brandan S. Hillerich, Scott J. Garforth, Steven C. Almo, Patrick S. Mariano, Debra Dunaway-Mariano, Karen N. Allen, and Jeremiah D. Farelli
Productive mRNA stem loop-mediated transcriptional slippage: Crucial features in common with intrinsic terminators Open Access Article
Christophe Penno, Virag Sharma, Arthur Coakley, Mary O'Connell Motherway, Douwe van Sinderen, Lucyna Lubkowska, Maria L. Kireeva, Mikhail Kashlev, Pavel V. Baranov, and John F. Atkins
A modular toolkit to inhibit proline-rich motif–mediated protein–protein interactions Open Access Article
Robert Opitz, Matthias Müller, Cédric Reuter, Matthias Barone, Arne Soicke, Yvette Roske, Kirill Piotukh, Peter Huy, Monika Beerbaum, Burkhard Wiesner, Michael Beyermann, Peter Schmieder, Christian Freund, Rudolf Volkmer, Hartmut Oschkinat, Hans-Günther Schmalz, and Ronald Kühne
A cytosolic heat shock protein 90 and cochaperone CDC37 complex is required for RIP3 activation during necroptosis
Dianrong Li, Tao Xu, Yang Cao, Huayi Wang, Lin Li, She Chen, Xiaodong Wang, and Zhirong Shen
Potential role for snoRNAs in PKR activation during metabolic stress Open Access Article
Osama A. Youssef, Sarah A. Safran, Takahisa Nakamura, David A. Nix, Gökhan S. Hotamisligil, and Brenda L. Bass
Biophysics and Computational Biology
Structural characterization of toxic oligomers that are kinetically trapped during α-synuclein fibril formation
Serene W. Chen, Srdja Drakulic, Emma Deas, Myriam Ouberai, Francesco A. Aprile, Rocío Arranz, Samuel Ness, Cintia Roodveldt, Tim Guilliams, Erwin J. De-Genst, David Klenerman, Nicholas W. Wood, Tuomas P.J. Knowles, Carlos Alfonso, Germán Rivas, Andrey Y. Abramov, José María Valpuesta, Christopher M. Dobson, and Nunilo Cremades
Homologous ligands accommodated by discrete conformations of a buried cavity Open Access Article
Matthew Merski, Marcus Fischer, Trent E. Balius, Oliv Eidam, and Brian K. Shoichet
Cell Biology
Acoustic separation of circulating tumor cells Open Access Article
Peng Li, Zhangming Mao, Zhangli Peng, Lanlan Zhou, Yuchao Chen, Po-Hsun Huang, Cristina I. Truica, Joseph J. Drabick, Wafik S. El-Deiry, Ming Dao, Subra Suresh, and Tony Jun Huang
NADPH oxidase DUOX1 promotes long-term persistence of oxidative stress after an exposure to irradiation
Rabii Ameziane-El-Hassani, Monique Talbot, Maria Carolina de Souza Dos Santos, Abir Al Ghuzlan, Dana Hartl, Jean-Michel Bidart, Xavier De Deken, Françoise Miot, Ibrahima Diallo, Florent de Vathaire, Martin Schlumberger, and Corinne Dupuy
Hydrophilic microenvironment required for the channel-independent insertase function of YidC protein
Naomi Shimokawa-Chiba, Kaoru Kumazaki, Tomoya Tsukazaki, Osamu Nureki, Koreaki Ito, and Shinobu Chiba
Developmental Biology
Cell-autonomous activation of Hedgehog signaling inhibits brown adipose tissue development
LaGina Nosavanh, Da-Hai Yu, Eric J. Jaehnig, Qiang Tong, Lanlan Shen, and Miao-Hsueh Chen
Sall4-Gli3 system in early limb progenitors is essential for the development of limb skeletal elements
Ryutaro Akiyama, Hiroko Kawakami, Julia Wong, Isao Oishi, Ryuichi Nishinakamura, and Yasuhiko Kawakami
Ecology
Virus decomposition provides an important contribution to benthic deep-sea ecosystem functioning Open Access Article
Antonio Dell'Anno, Cinzia Corinaldesi, and Roberto Danovaro
US protected lands mismatch biodiversity priorities Open Access Article
Clinton N. Jenkins, Kyle S. Van Houtan, Stuart L. Pimm, and Joseph O. Sexton
Evolution
Insights into the origins of fish hunting in venomous cone snails from studies of Conus tessulatus
Joseph W. Aman, Julita S. Imperial, Beatrix Ueberheide, Min-Min Zhang, Manuel Aguilar, Dylan Taylor, Maren Watkins, Doju Yoshikami, Patrice Showers-Corneli, Helena Safavi-Hemami, Jason Biggs, Russell W. Teichert, and Baldomero M. Olivera
Adaptive evolution toward larger size in mammals
Joanna Baker, Andrew Meade, Mark Pagel, and Chris Venditti
Genetics
Maternal and zygotic Zfp57 modulate NOTCH signaling in cardiac development
Yulia Shamis, Dana E. Cullen, Lizhi Liu, Guan Yang, Sheau-Fang Ng, Lijuan Xiao, Fong T. Bell, Chelsea Ray, Sachiko Takikawa, Ivan P. Moskowitz, Chen-Leng Cai, Xiao Yang, and Xiajun Li
Telomere dysfunction causes alveolar stem cell failure Open Access Article
Jonathan K. Alder, Christina E. Barkauskas, Nathachit Limjunyawong, Susan E. Stanley, Frant Kembou, Rubin M. Tuder, Brigid L. M. Hogan, Wayne Mitzner, and Mary Armanios
Evolution of the rapidly mutating human salivary agglutinin gene (DMBT1) and population subsistence strategy Open Access Article
Shamik Polley, Sandra Louzada, Diego Forni, Manuela Sironi, Theodosius Balaskas, David S. Hains, Fengtang Yang, and Edward J. Hollox
Immunology and Inflammation
Sterile inflammation in the spleen during atherosclerosis provides oxidation-specific epitopes that induce a protective B-cell response
Emilie K. Grasset, Amanda Duhlin, Hanna E. Agardh, Olga Ovchinnikova, Thomas Hägglöf, Mattias N. Forsell, Gabrielle Paulsson-Berne, Göran K. Hansson, Daniel F. J. Ketelhuth, and Mikael C. I. Karlsson
Human IL-32 expression protects mice against a hypervirulent strain of Mycobacterium tuberculosis
Xiyuan Bai, Shaobin Shang, Marcela Henao-Tamayo, Randall J. Basaraba, Alida R. Ovrutsky, Jennifer L. Matsuda, Katsuyuki Takeda, Mallory M. Chan, Azzeddine Dakhama, William H. Kinney, Jessica Trostel, An Bai, Jennifer R. Honda, Rosane Achcar, John Hartney, Leo A. B. Joosten, Soo-Hyun Kim, Ian Orme, Charles A. Dinarello, Diane J. Ordway, and Edward D. Chan
Exonuclease TREX1 degrades double-stranded DNA to prevent spontaneous lupus-like inflammatory disease
Jessica L. Grieves, Jason M. Fye, Scott Harvey, Jason M. Grayson, Thomas Hollis, and Fred W. Perrino
PLZF expression maps the early stages of ILC1 lineage development
Michael G. Constantinides, Herman Gudjonson, Benjamin D. McDonald, Isabel E. Ishizuka, Philip A. Verhoef, Aaron R. Dinner, and Albert Bendelac
Medical Sciences
In vivo characterization of chronic traumatic encephalopathy using [F-18]FDDNP PET brain imaging
Jorge R. Barrio, Gary W. Small, Koon-Pong Wong, Sung-Cheng Huang, Jie Liu, David A. Merrill, Christopher C. Giza, Robert P. Fitzsimmons, Bennet Omalu, Julian Bailes, and Vladimir Kepe
Compromised peroxisomes in idiopathic pulmonary fibrosis, a vicious cycle inducing a higher fibrotic response via TGF-β signaling
Gani Oruqaj, Srikanth Karnati, Vijith Vijayan, Lakshmi Kanth Kotarkonda, Eistine Boateng, Wenming Zhang, Clemens Ruppert, Andreas Günther, Wei Shi, and Eveline Baumgart-Vogt
Visualized macrophage dynamics and significance of S100A8 in obese fat
Ryohei Sekimoto, Shiro Fukuda, Norikazu Maeda, Yu Tsushima, Keisuke Matsuda, Takuya Mori, Hideaki Nakatsuji, Hitoshi Nishizawa, Ken Kishida, Junichi Kikuta, Yumiko Maijima, Tohru Funahashi, Masaru Ishii, and Iichiro Shimomura
Seizure-like activity in a juvenile Angelman syndrome mouse model is attenuated by reducing Arc expression
Caleigh Mandel-Brehm, John Salogiannis, Sameer C. Dhamne, Alexander Rotenberg, and Michael E. Greenberg
Estrogen receptor β exon 3-deleted mouse: The importance of non-ERE pathways in ERβ signaling
Laure Maneix, Per Antonson, Patricia Humire, Sabrina Rochel-Maia, Jessica Castañeda, Yoko Omoto, Hyun-Jin Kim, Margaret Warner, and Jan-Åke Gustafsson
Endothelin-1 critically influences cardiac function via superoxide-MMP9 cascade Open Access Article
Catherine K. Hathaway, Ruriko Grant, John R. Hagaman, Sylvia Hiller, Feng Li, Longquan Xu, Albert S. Chang, Victoria J. Madden, C. Robert Bagnell, Mauricio Rojas, Hyung-Suk Kim, Bingruo Wu, Bin Zhou, Oliver Smithies, and Masao Kakoki
Using bimodal MRI/fluorescence imaging to identify host angiogenic response to implants
Alexandra Berdichevski, Haneen Simaan Yameen, Hagit Dafni, Michal Neeman, and Dror Seliktar
Long-acting progestin-only contraceptives impair endometrial vasculature by inhibiting uterine vascular smooth muscle cell survival Open Access Article
Umit A. Kayisli, Murat Basar, Ozlem Guzeloglu-Kayisli, Nihan Semerci, Helen C. Atkinson, John Shapiro, Taryn Summerfield, S. Joseph Huang, Katja Prelle, Frederick Schatz, and Charles J. Lockwood
Microbiology
Structure of CARDS toxin, a unique ADP-ribosylating and vacuolating cytotoxin from Mycoplasma pneumoniae
Argentina Becker, T. R. Kannan, Alexander B. Taylor, Olga N. Pakhomova, Yanfeng Zhang, Sudha R. Somarajan, Ahmad Galaleldeen, Stephen P. Holloway, Joel B. Baseman, and P. John Hart
Stochastic induction of persister cells by HipA through (p)ppGpp-mediated activation of mRNA endonucleases
Elsa Germain, Mohammad Roghanian, Kenn Gerdes, and Etienne Maisonneuve
Rgg protein structure–function and inhibition by cyclic peptide compounds
Vijay Parashar, Chaitanya Aggarwal, Michael J. Federle, and Matthew B. Neiditch
Salmonella promotes virulence by repressing cellulose production
Mauricio H. Pontes, Eun-Jin Lee, Jeongjoon Choi, and Eduardo A. Groisman
General and condition-specific essential functions of Pseudomonas aeruginosa
Samuel A. Lee, Larry A. Gallagher, Metawee Thongdee, Benjamin J. Staudinger, Soyeon Lippman, Pradeep K. Singh, and Colin Manoil
Neuroscience
Motor role of parietal cortex in a monkey model of hemispatial neglect
Jan Kubanek, Jingfeng M. Li, and Lawrence H. Snyder
Asphyxia-activated corticocardiac signaling accelerates onset of cardiac arrest
Duan Li, Omar S. Mabrouk, Tiecheng Liu, Fangyun Tian, Gang Xu, Santiago Rengifo, Sarah J. Choi, Abhay Mathur, Charles P. Crooks, Robert T. Kennedy, Michael M. Wang, Hamid Ghanbari, and Jimo Borjigin
Cortical activity is more stable when sensory stimuli are consciously perceived
Aaron Schurger, Ioannis Sarigiannidis, Lionel Naccache, Jacobo D. Sitt, and Stanislas Dehaene
Identity-specific coding of future rewards in the human orbitofrontal cortex
James D. Howard, Jay A. Gottfried, Philippe N. Tobler, and Thorsten Kahnt
Information flow between interacting human brains: Identification, validation, and relationship to social expertise
Edda Bilek, Matthias Ruf, Axel Schäfer, Ceren Akdeniz, Vince D. Calhoun, Christian Schmahl, Charmaine Demanuele, Heike Tost, Peter Kirsch, and Andreas Meyer-Lindenberg
Pain-enhancing mechanism through interaction between TRPV1 and anoctamin 1 in sensory neurons
Yasunori Takayama, Daisuke Uta, Hidemasa Furue, and Makoto Tominaga
Octopamine mediates starvation-induced hyperactivity in adult Drosophila Open Access Article
Zhe Yang, Yue Yu, Vivian Zhang, Yinjun Tian, Wei Qi, and Liming Wang
Edaravone alleviates Alzheimer's disease-type pathologies and cognitive deficits Open Access Article
Shu-Sheng Jiao, Xiu-Qing Yao, Yu-Hui Liu, Qing-Hua Wang, Fan Zeng, Jian-Jun Lu, Jia Liu, Chi Zhu, Lin-Lin Shen, Cheng-Hui Liu, Ye-Ran Wang, Gui-Hua Zeng, Ankit Parikh, Jia Chen, Chun-Rong Liang, Yang Xiang, Xian-Le Bu, Juan Deng, Jing Li, Juan Xu, Yue-Qin Zeng, Xiang Xu, Hai-Wei Xu, Jin-Hua Zhong, Hua-Dong Zhou, Xin-Fu Zhou, and Yan-Jiang Wang
Pharmacology
Mitigation of acute kidney injury by cell-cycle inhibitors that suppress both CDK4/6 and OCT2 functions
Navjotsingh Pabla, Alice A. Gibson, Mike Buege, Su Sien Ong, Lie Li, Shuiying Hu, Guoqing Du, Jason A. Sprowl, Aksana Vasilyeva, Laura J. Janke, Eberhard Schlatter, Taosheng Chen, Giuliano Ciarimboli, and Alex Sparreboom
Physiology
Structural basis for substrate specificity of an amino acid ABC transporter Open Access Article
Jie Yu, Jingpeng Ge, Johanna Heuveling, Erwin Schneider, and Maojun Yang
Plant Biology
Population Biology
The human sex ratio from conception to birth Open Access Article From the Cover
Steven Hecht Orzack, J. William Stubblefield, Viatcheslav R. Akmaev, Pere Colls, Santiago Munné, Thomas Scholl, David Steinsaltz, and James E. Zuckerman

Corrections (Online Only)
Cover

Open Access
From the Cover
Inaugural Article
Classic
Cozzarelli Prize Winner
Front Matter

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