Fwd: PNAS Section Alert for March 29, 2016

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Proceedings of the National Academy of Sciences Section Alert for March 29, 2016 Genetics Major spliceosome defects cause male infertility and are associated with nonobstructive azoospermia in humans Hao Wu, Liwei Sun, Yang Wen, Yujuan Liu, Jun Yu, Feiyu Mao, Ya Wang, Chao Tong, Xuejiang Guo, Zhibin Hu, Jiahao Sha, Mingxi Liu, and Laixin Xia No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini  Georgios Koutsovoulos, Sujai Kumar, Dominik R. Laetsch, Lewis Stevens, Jennifer Daub, Claire Conlon, Habib Maroon, Fran Thomas, Aziz A. Aboobaker, and Mark Blaxter Enhanced gene targeting to evaluate Lynch syndrome alterations Richard Fishel and Christopher D. Heinen Anthropology Reply to Stoet and Geary: Effects of gendered behavior on testosterone, not sex differences, as research focus Sari M. van Anders, Katherine L. Goldey, and Jeffrey Steiger Hunted gazelles evidence cooling, but not drying, during the Younger Dryas in the southern Levant Gideon Hartman, Ofer Bar-Yosef, Alex Brittingham, Leore Grosman, and Natalie D. Munro Immunology and Inflammation Oral activity of a nature-derived cyclic peptide for the treatment of multiple sclerosis  Kathrin Thell, Roland Hellinger, Emine Sahin, Paul Michenthaler, Markus Gold-Binder, Thomas Haider, Mario Kuttke, Zita Liutkevičiūtė, Ulf Göransson, Carsten Gründemann, Gernot Schabbauer, and Christian W. Gruber Defects in lysosomal maturation facilitate the activation of innate sensors in systemic lupus erythematosus Andrew J. Monteith, SunAh Kang, Eric Scott, Kai Hillman, Zenon Rajfur, Ken Jacobson, M. Joseph Costello, and Barbara J. Vilen Applied Biological Sciences Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes  Andrew Brantley Hall, Philippos-Aris Papathanos, Atashi Sharma, Changde Cheng, Omar S. Akbari, Lauren Assour, Nicholas H. Bergman, Alessia Cagnetti, Andrea Crisanti, Tania Dottorini, Elisa Fiorentini, Roberto Galizi, Jonathan Hnath, Xiaofang Jiang, Sergey Koren, Tony Nolan, Diane Radune, Maria V. Sharakhova, Aaron Steele, Vladimir A. Timoshevskiy, Nikolai Windbichler, Simo Zhang, Matthew W. Hahn, Adam M. Phillippy, Scott J. Emrich, Igor V. Sharakhov, Zhijian Jake Tu, and Nora J. Besansky [18F]CFA as a clinically translatable probe for PET imaging of deoxycytidine kinase activity Woosuk Kim, Thuc M. Le, Liu Wei, Soumya Poddar, Jimmy Bazzy, Xuemeng Wang, Nhu T. Uong, Evan R. Abt, Joseph R. Capri, Wayne R. Austin, Juno S. Van Valkenburgh, Dalton Steele, Raymond M. Gipson, Roger Slavik, Anthony E. Cabebe, Thotsophon Taechariyakul, Shahriar S. Yaghoubi, Jason T. Lee, Saman Sadeghi, Arnon Lavie, Kym F. Faull, Owen N. Witte, Timothy R. Donahue, Michael E. Phelps, Harvey R. Herschman, Ken Herrmann, Johannes Czernin, and Caius G. Radu Applied Mathematics Discovering governing equations from data by sparse identification of nonlinear dynamical systems  Steven L. Brunton, Joshua L. Proctor, and J. Nathan Kutz Medical Sciences Reporter nanoparticle that monitors its anticancer efficacy in real time Ashish Kulkarni, Poornima Rao, Siva Natarajan, Aaron Goldman, Venkata S. Sabbisetti, Yashika Khater, Navya Korimerla, Vineethkrishna Chandrasekar, Raghunath A. Mashelkar, and Shiladitya Sengupta Anabolic actions of Notch on mature bone Peng Liu, Yilin Ping, Meng Ma, Demao Zhang, Connie Liu, Samir Zaidi, Song Gao, Yaoting Ji, Feng Lou, Fanyuan Yu, Ping Lu, Agnes Stachnik, Mingru Bai, Chengguo Wei, Liaoran Zhang, Ke Wang, Rong Chen, Maria I. New, David W. Rowe, Tony Yuen, Li Sun, and Mone Zaidi Stimuli-responsive clustered nanoparticles for improved tumor penetration and therapeutic efficacy Hong-Jun Li, Jin-Zhi Du, Xiao-Jiao Du, Cong-Fei Xu, Chun-Yang Sun, Hong-Xia Wang, Zhi-Ting Cao, Xian-Zhu Yang, Yan-Hua Zhu, Shuming Nie, and Jun Wang Myofibroblasts are distinguished from activated skin fibroblasts by the expression of AOC3 and other associated markers Lin-ting Hsia, Neil Ashley, Djamila Ouaret, Lai Mun Wang, Jennifer Wilding, and Walter F. Bodmer Engineering a long-acting, potent GLP-1 analog for microstructure-based transdermal delivery  Peng-Yu Yang, Huafei Zou, Elizabeth Chao, Lance Sherwood, Vanessa Nunez, Michael Keeney, Esi Ghartey-Tagoe, Zhongli Ding, Herlinda Quirino, Xiaozhou Luo, Gus Welzel, Guohua Chen, Parminder Singh, Ashley K. Woods, Peter G. Schultz, and Weijun Shen Endocrine vasculatures are preferable targets of an antitumor ineffective low dose of anti-VEGF therapy Yin Zhang, Yunlong Yang, Kayoko Hosaka, Guichun Huang, Jingwu Zang, Fang Chen, Yun Zhang, Nilesh J. Samani, and Yihai Cao Transmission dynamics of Ebola virus disease and intervention effectiveness in Sierra Leone  Li-Qun Fang, Yang Yang, Jia-Fu Jiang, Hong-Wu Yao, David Kargbo, Xin-Lou Li, Bao-Gui Jiang, Brima Kargbo, Yi-Gang Tong, Ya-Wei Wang, Kun Liu, Abdul Kamara, Foday Dafae, Alex Kanu, Rui-Ruo Jiang, Ye Sun, Ruo-Xi Sun, Wan-Jun Chen, Mai-Juan Ma, Natalie E. Dean, Harold Thomas, Ira M. Longini Jr., M. Elizabeth Halloran, and Wu-Chun Cao Spironolactone blocks Epstein–Barr virus production by inhibiting EBV SM protein function Dinesh Verma, Jacob Thompson, and Sankar Swaminathan S-nitrosation of proteins relevant to Alzheimer's disease during early stages of neurodegeneration  Uthpala Seneviratne, Alexi Nott, Vadiraja B. Bhat, Kodihalli C. Ravindra, John S. Wishnok, Li-Huei Tsai, and Steven R. Tannenbaum Applied Physical Sciences Modulation of nitrogen vacancy charge state and fluorescence in nanodiamonds using electrochemical potential  Sinan Karaveli, Ophir Gaathon, Abraham Wolcott, Reyu Sakakibara, Or A. Shemesh, Darcy S. Peterka, Edward S. Boyden, Jonathan S. Owen, Rafael Yuste, and Dirk Englund Microbiology Output-driven feedback system control platform optimizes combinatorial therapy of tuberculosis using a macrophage cell culture model Aleidy Silva, Bai-Yu Lee, Daniel L. Clemens, Theodore Kee, Xianting Ding, Chih-Ming Ho, and Marcus A. Horwitz Two distinct trimeric conformations of natively membrane-anchored full-length herpes simplex virus 1 glycoprotein B Tzviya Zeev-Ben-Mordehai, Daven Vasishtan, Anna Hernández Durán, Benjamin Vollmer, Paul White, Arun Prasad Pandurangan, C. Alistair Siebert, Maya Topf, and Kay Grünewald Three-dimensional architecture of Vibrio cholera biofilms Gerard C. L. Wong Astronomy Turbulent dynamo in a collisionless plasma François Rincon, Francesco Califano, Alexander A. Schekochihin, and Francesco Valentini Magnetic field evolution in magnetar crusts through three-dimensional simulations Konstantinos N. Gourgouliatos, Toby S. Wood, and Rainer Hollerbach Neuroscience Spatial patterns of cutaneous vibration during whole-hand haptic interactions Yitian Shao, Vincent Hayward, and Yon Visell Intrathecal gene therapy rescues a model of demyelinating peripheral neuropathy Alexia Kagiava, Irene Sargiannidou, George Theophilidis, Christos Karaiskos, Jan Richter, Stavros Bashiardes, Natasa Schiza, Marianna Nearchou, Christina Christodoulou, Steven S. Scherer, and Kleopas A. Kleopa Mixing and matching TREK/TRAAK subunits generate heterodimeric K2P channels with unique properties Sandy Blin, Ismail Ben Soussia, Eun-Jin Kim, Frédéric Brau, Dawon Kang, Florian Lesage, and Delphine Bichet Heterodimerization within the TREK channel subfamily produces a diverse family of highly regulated potassium channels Joshua Levitz, Perrine Royal, Yannick Comoglio, Brigitte Wdziekonski, Sébastien Schaub, Daniel M. Clemens, Ehud Y. Isacoff, and Guillaume Sandoz Paclitaxel-induced epithelial damage and ectopic MMP-13 expression promotes neurotoxicity in zebrafish  Thomas S. Lisse, Leah J. Middleton, Adriana D. Pellegrini, Paige B. Martin, Emily L. Spaulding, Olivia Lopes, Elizabeth A. Brochu, Erin V. Carter, Ashley Waldron, and Sandra Rieger Dopamine synapse is a neuroligin-2–mediated contact between dopaminergic presynaptic and GABAergic postsynaptic structures Motokazu Uchigashima, Toshihisa Ohtsuka, Kazuto Kobayashi, and Masahiko Watanabe Biochemistry Host–parasite oscillation dynamics and evolution in a compartmentalized RNA replication system Yohsuke Bansho, Taro Furubayashi, Norikazu Ichihashi, and Tetsuya Yomo Genome-wide kinetics of DNA excision repair in relation to chromatin state and mutagenesis Sheera Adar, Jinchuan Hu, Jason D. Lieb, and Aziz Sancar Functional architecture of the Reb1-Ter complex of Schizosaccharomyces pombe Rahul Jaiswal, Malay Choudhury, Shamsu Zaman, Samarendra Singh, Vishaka Santosh, Deepak Bastia, and Carlos R. Escalante Structures of E. coli σS-transcription initiation complexes provide new insights into polymerase mechanism  Bin Liu, Yuhong Zuo, and Thomas A. Steitz Individual variability in human blood metabolites identifies age-related differences   Romanas Chaleckis, Itsuo Murakami, Junko Takada, Hiroshi Kondoh, and Mitsuhiro Yanagida Self-assembly of crystalline nanotubes from monodisperse amphiphilic diblock copolypeptoid tiles Jing Sun, Xi Jiang, Reidar Lund, Kenneth H. Downing, Nitash P. Balsara, and Ronald N. Zuckermann S-nitrosation of proteins relevant to Alzheimer's disease during early stages of neurodegeneration  Uthpala Seneviratne, Alexi Nott, Vadiraja B. Bhat, Kodihalli C. Ravindra, John S. Wishnok, Li-Huei Tsai, and Steven R. Tannenbaum Biophysics and Computational Biology Rating antifreeze proteins: Not a breeze Amir Haji-Akbari Surface force measurements and simulations of mussel-derived peptide adhesives on wet organic surfaces Zachary A. Levine, Michael V. Rapp, Wei Wei, Ryan Gotchy Mullen, Chun Wu, Gül H. Zerze, Jeetain Mittal, J. Herbert Waite, Jacob N. Israelachvili, and Joan-Emma Shea Simultaneous single-molecule epigenetic imaging of DNA methylation and hydroxymethylation Chun-Xiao Song, Jiajie Diao, Axel T. Brunger, and Stephen R. Quake Stokes trap for multiplexed particle manipulation and assembly using fluidics Anish Shenoy, Christopher V. Rao, and Charles M. Schroeder Discrete gene replication events drive coupling between the cell cycle and circadian clocks  Joris Paijmans, Mark Bosman, Pieter Rein ten Wolde, and David K. Lubensky Measuring and modeling diffuse scattering in protein X-ray crystallography  Andrew H. Van Benschoten, Lin Liu, Ana Gonzalez, Aaron S. Brewster, Nicholas K. Sauter, James S. Fraser, and Michael E. Wall Physics Electric field-induced superconducting transition of insulating FeSe thin film at 35 K Kota Hanzawa, Hikaru Sato, Hidenori Hiramatsu, Toshio Kamiya, and Hideo Hosono Cell Biology Modeling and analysis of collective cell migration in an in vivo three-dimensional environment Danfeng Cai, Wei Dai, Mohit Prasad, Junjie Luo, Nir S. Gov, and Denise J. Montell CRF binding protein facilitates the presence of CRF type 2α receptor on the cell surface Paula G. Slater, Cledi A. Cerda, Luis A. Pereira, María E. Andrés, and Katia Gysling Physiology Rethinking progesterone regulation of female reproductive cyclicity Kaiyu Kubota, Wei Cui, Pramod Dhakal, Michael W. Wolfe, M. A. Karim Rumi, Jay L. Vivian, Katherine F. Roby, and Michael J. Soares Chemistry Rating antifreeze proteins: Not a breeze Amir Haji-Akbari Oral activity of a nature-derived cyclic peptide for the treatment of multiple sclerosis  Kathrin Thell, Roland Hellinger, Emine Sahin, Paul Michenthaler, Markus Gold-Binder, Thomas Haider, Mario Kuttke, Zita Liutkevičiūtė, Ulf Göransson, Carsten Gründemann, Gernot Schabbauer, and Christian W. Gruber Engineering titania nanostructure to tune and improve its photocatalytic activity Matteo Cargnello, Tiziano Montini, Sergey Y. Smolin, Jacqueline B. Priebe, Juan J. Delgado Jaén, Vicky V. T. Doan-Nguyen, Ian S. McKay, Jay A. Schwalbe, Marga-Martina Pohl, Thomas R. Gordon, Yupeng Lu, Jason B. Baxter, Angelika Brückner, Paolo Fornasiero, and Christopher B. Murray Self-assembly of crystalline nanotubes from monodisperse amphiphilic diblock copolypeptoid tiles Jing Sun, Xi Jiang, Reidar Lund, Kenneth H. Downing, Nitash P. Balsara, and Ronald N. Zuckermann Engineering a long-acting, potent GLP-1 analog for microstructure-based transdermal delivery  Peng-Yu Yang, Huafei Zou, Elizabeth Chao, Lance Sherwood, Vanessa Nunez, Michael Keeney, Esi Ghartey-Tagoe, Zhongli Ding, Herlinda Quirino, Xiaozhou Luo, Gus Welzel, Guohua Chen, Parminder Singh, Ashley K. Woods, Peter G. Schultz, and Weijun Shen Plant Biology GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement Yukari Nagatoshi, Nobutaka Mitsuda, Maki Hayashi, Shin-ichiro Inoue, Eiji Okuma, Akihiro Kubo, Yoshiyuki Murata, Mitsunori Seo, Hikaru Saji, Toshinori Kinoshita, and Masaru Ohme-Takagi DELAY OF GERMINATION1 (DOG1) regulates both seed dormancy and flowering time through microRNA pathways Heqiang Huo, Shouhui Wei, and Kent J. Bradford Earth, Atmospheric, and Planetary Sciences Markedly enhanced absorption and direct radiative forcing of black carbon under polluted urban environments  Jianfei Peng, Min Hu, Song Guo, Zhuofei Du, Jing Zheng, Dongjie Shang, Misti Levy Zamora, Limin Zeng, Min Shao, Yu-Sheng Wu, Jun Zheng, Yuan Wang, Crystal R. Glen, Donald R. Collins, Mario J. Molina, and Renyi Zhang Hunted gazelles evidence cooling, but not drying, during the Younger Dryas in the southern Levant Gideon Hartman, Ofer Bar-Yosef, Alex Brittingham, Leore Grosman, and Natalie D. Munro Sustained eruptions on Enceladus explained by turbulent dissipation in tiger stripes Edwin S. Kite and Allan M. Rubin Psychological and Cognitive Sciences Reply to Stoet and Geary: Effects of gendered behavior on testosterone, not sex differences, as research focus Sari M. van Anders, Katherine L. Goldey, and Jeffrey Steiger Dominant, open nonverbal displays are attractive at zero-acquaintance Tanya Vacharkulksemsuk, Emily Reit, Poruz Khambatta, Paul W. Eastwick, Eli J. Finkel, and Dana R. Carney Small-scale societies exhibit fundamental variation in the role of intentions in moral judgment  H. Clark Barrett, Alexander Bolyanatz, Alyssa N. Crittenden, Daniel M. T. Fessler, Simon Fitzpatrick, Michael Gurven, Joseph Henrich, Martin Kanovsky, Geoff Kushnick, Anne Pisor, Brooke A. Scelza, Stephen Stich, Chris von Rueden, Wanying Zhao, and Stephen Laurence Ecology Conditional vulnerability of plant diversity to atmospheric nitrogen deposition across the United States Samuel M. Simkin, Edith B. Allen, William D. Bowman, Christopher M. Clark, Jayne Belnap, Matthew L. Brooks, Brian S. Cade, Scott L. Collins, Linda H. Geiser, Frank S. Gilliam, Sarah E. Jovan, Linda H. Pardo, Bethany K. Schulz, Carly J. Stevens, Katharine N. Suding, Heather L. Throop, and Donald M. Waller Differential and enhanced response to climate forcing in diarrheal disease due to rotavirus across a megacity of the developing world  Pamela P. Martinez, Aaron A. King, Mohammad Yunus, A. S. G. Faruque, and Mercedes Pascual Predation risk drives social complexity in cooperative breeders Frank Groenewoud, Joachim Gerhard Frommen, Dario Josi, Hirokazu Tanaka, Arne Jungwirth, and Michael Taborsky Social Sciences Rise, stagnation, and rise of Danish women's life expectancy  Rune Lindahl-Jacobsen, Roland Rau, Bernard Jeune, Vladimir Canudas-Romo, Adam Lenart, Kaare Christensen, and James W. Vaupel Economic Sciences Testing theories of financial decision making Christopher P. Chambers, Federico Echenique, and Kota Saito Engineering Reporter nanoparticle that monitors its anticancer efficacy in real time Ashish Kulkarni, Poornima Rao, Siva Natarajan, Aaron Goldman, Venkata S. Sabbisetti, Yashika Khater, Navya Korimerla, Vineethkrishna Chandrasekar, Raghunath A. Mashelkar, and Shiladitya Sengupta Spatial patterns of cutaneous vibration during whole-hand haptic interactions Yitian Shao, Vincent Hayward, and Yon Visell Stokes trap for multiplexed particle manipulation and assembly using fluidics Anish Shenoy, Christopher V. Rao, and Charles M. Schroeder Sustainability Science Global fishery prospects under contrasting management regimes  Christopher Costello, Daniel Ovando, Tyler Clavelle, C. Kent Strauss, Ray Hilborn, Michael C. Melnychuk, Trevor A. Branch, Steven D. Gaines, Cody S. Szuwalski, Reniel B. Cabral, Douglas N. Rader, and Amanda Leland Global fishery prospects under contrasting management regimes  Christopher Costello, Daniel Ovando, Tyler Clavelle, C. Kent Strauss, Ray Hilborn, Michael C. Melnychuk, Trevor A. Branch, Steven D. Gaines, Cody S. Szuwalski, Reniel B. Cabral, Douglas N. Rader, and Amanda Leland Global fishery prospects under contrasting management regimes Christopher Costello, Daniel Ovando, Tyler Clavelle, C. Kent Strauss, Ray Hilborn, Michael C. Melnychuk, Trevor A. Branch, Steven D. Gaines, Cody S. Szuwalski, Reniel B. Cabral, Douglas N. Rader, and Amanda Leland Land-use policies and corporate investments in agriculture in the Gran Chaco and Chiquitano  Yann le Polain de Waroux, Rachael D. Garrett, Robert Heilmayr, and Eric F. Lambin Environmental Sciences Global fishery prospects under contrasting management regimes  Christopher Costello, Daniel Ovando, Tyler Clavelle, C. Kent Strauss, Ray Hilborn, Michael C. Melnychuk, Trevor A. Branch, Steven D. Gaines, Cody S. Szuwalski, Reniel B. Cabral, Douglas N. Rader, and Amanda Leland Global fishery prospects under contrasting management regimes  Christopher Costello, Daniel Ovando, Tyler Clavelle, C. Kent Strauss, Ray Hilborn, Michael C. Melnychuk, Trevor A. Branch, Steven D. Gaines, Cody S. Szuwalski, Reniel B. Cabral, Douglas N. Rader, and Amanda Leland Global fishery prospects under contrasting management regimes Christopher Costello, Daniel Ovando, Tyler Clavelle, C. Kent Strauss, Ray Hilborn, Michael C. Melnychuk, Trevor A. Branch, Steven D. Gaines, Cody S. Szuwalski, Reniel B. Cabral, Douglas N. Rader, and Amanda Leland Coastal landforms and accumulation of mangrove peat increase carbon sequestration and storage  Paula Ezcurra, Exequiel Ezcurra, Pedro P. Garcillán, Matthew T. Costa, and Octavio Aburto-Oropeza Measurement of Fukushima-related radioactive contamination in aquatic species Mark P. Little, Richard Wakeford, André Bouville, and Steven L. Simon Evolution Horizontally acquired genes in early-diverging pathogenic fungi enable the use of host nucleosides and nucleotides William G. Alexander, Jennifer H. Wisecaver, Antonis Rokas, and Chris Todd Hittinger In This Issue In This Issue Letters and Replies Reply to Stoet and Geary: Effects of gendered behavior on testosterone, not sex differences, as research focus Sari M. van Anders, Katherine L. Goldey, and Jeffrey Steiger Open Access From the Cover Inaugural Article Classic Cozzarelli Prize Winner Front Matter This message was sent to pascal.alter@gmail.com. l: Customer Service * 425 Broad* Redwood City, CA 94063 * U.S.A. Copyright © 2016 by the National Academy of Sciences