Fwd: PNAS Section Alert for March 1, 2016

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Subject: PNAS Section Alert for March 1, 2016
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Proceedings of the National Academy of Sciences Section Alert for March 1, 2016 Anthropology Alzheimer's disease CD33 rs3865444 variant does not contribute to cognitive performance Guiyou Liu and Qinghua Jiang Reply to Liu and Jiang: Maintenance of postreproductive cognitive capacity by inclusive fitness Stevan A. Springer, Flavio Schwarz, Tasha K. Altheide, Nissi M. Varki, Ajit Varki, and Pascal Gagneux Partial connectivity increases cultural accumulation within groups Maxime Derex and Robert Boyd Material heterogeneity in cancellous bone promotes deformation recovery after mechanical failure Ashley M. Torres, Jonathan B. Matheny, Tony M. Keaveny, David Taylor, Clare M. Rimnac, and Christopher J. Hernandez Immunology and Inflammation Revealing the TCR bias for MHC molecules Sai Harsha Krovi and Laurent Gapin Functional requirements of AID's higher order structures and their interaction with RNA-binding proteins Samiran Mondal, Nasim A. Begum, Wenjun Hu, and Tasuku Honjo Endolysosomal trafficking of viral G protein-coupled receptor functions in innate immunity and control of viral oncogenesis  Xiaonan Dong, Adam Cheng, Zhongju Zou, Yih-Sheng Yang, Rhea M. Sumpter Jr., Chou-Long Huang, Govind Bhagat, Herbert W. Virgin, Sergio A. Lira, and Beth Levine Autoinhibition and relief mechanism by the proteolytic processing of Toll-like receptor 8 Hiromi Tanji, Umeharu Ohto, Yuji Motoi, Takuma Shibata, Kensuke Miyake, and Toshiyuki Shimizu Mathematics Measures with locally finite support and spectrum  Yves F. Meyer Medical Sciences Alzheimer's disease CD33 rs3865444 variant does not contribute to cognitive performance Guiyou Liu and Qinghua Jiang Reply to Liu and Jiang: Maintenance of postreproductive cognitive capacity by inclusive fitness Stevan A. Springer, Flavio Schwarz, Tasha K. Altheide, Nissi M. Varki, Ajit Varki, and Pascal Gagneux Pten loss promotes MAPK pathway dependency in HER2/neu breast carcinomas  Saya H. Ebbesen, Maurizio Scaltriti, Carl U. Bialucha, Natasha Morse, Edward R. Kastenhuber, Hannah Y. Wen, Lukas E. Dow, José Baselga, and Scott W. Lowe Disrupted iron homeostasis causes dopaminergic neurodegeneration in mice   Pavle Matak, Andrija Matak, Sarah Moustafa, Dipendra K. Aryal, Eric J. Benner, William Wetsel, and Nancy C. Andrews Critical role for Epac1 in inflammatory pain controlled by GRK2-mediated phosphorylation of Epac1 Pooja Singhmar, XiaoJiao Huo, Niels Eijkelkamp, Susana Rojo Berciano, Faiza Baameur, Fang C. Mei, Yingmin Zhu, Xiaodong Cheng, David Hawke, Federico Mayor Jr., Cristina Murga, Cobi J. Heijnen, and Annemieke Kavelaars Immunoproteasome deficiency is a feature of non-small cell lung cancer with a mesenchymal phenotype and is associated with a poor outcome Satyendra C. Tripathi, Haley L. Peters, Ayumu Taguchi, Hiroyuki Katayama, Hong Wang, Amin Momin, Mohit Kumar Jolly, Muge Celiktas, Jaime Rodriguez-Canales, Hui Liu, Carmen Behrens, Ignacio I. Wistuba, Eshel Ben-Jacob, Herbert Levine, Jeffrey J. Molldrem, Samir M. Hanash, and Edwin J. Ostrin High-throughput small molecule screen identifies inhibitors of aberrant chromatin accessibility Samantha G. Pattenden, Jeremy M. Simon, Aminah Wali, Chatura N. Jayakody, Jacob Troutman, Andrew W. McFadden, Joshua Wooten, Cameron C. Wood, Stephen V. Frye, William P. Janzen, and Ian J. Davis Applied Physical Sciences Long-ranged contributions to solvation free energies from theory and short-ranged models  Richard C. Remsing, Shule Liu, and John D. Weeks Actomyosin dynamics drive local membrane component organization in an in vitro active composite layer Darius Vasco Köster, Kabir Husain, Elda Iljazi, Abrar Bhat, Peter Bieling, R. Dyche Mullins, Madan Rao, and Satyajit Mayor Mushrooms use convectively created airflows to disperse their spores Emilie Dressaire, Lisa Yamada, Boya Song, and Marcus Roper Fiber networks amplify active stress Pierre Ronceray, Chase P. Broedersz, and Martin Lenz Microbiology Architectural transitions in Vibrio cholerae biofilms at single-cell resolution Knut Drescher, Jörn Dunkel, Carey D. Nadell, Sven van Teeffelen, Ivan Grnja, Ned S. Wingreen, Howard A. Stone, and Bonnie L. Bassler Disruption of lipid homeostasis in the Gram-negative cell envelope activates a novel cell death pathway Holly A. Sutterlin, Handuo Shi, Kerrie L. May, Amanda Miguel, Somya Khare, Kerwyn Casey Huang, and Thomas J. Silhavy The retrovirus HTLV-1 inserts an ectopic CTCF-binding site into the human genome Yorifumi Satou, Paola Miyazato, Ko Ishihara, Hiroko Yaguchi, Anat Melamed, Michi Miura, Asami Fukuda, Kisato Nosaka, Takehisa Watanabe, Aileen G. Rowan, Mitsuyoshi Nakao, and Charles R. M. Bangham Type VI secretion system sheaths as nanoparticles for antigen display  Elena Del Tordello, Olga Danilchanka, Andrew J. McCluskey, and John J. Mekalanos Neuroscience Excitatory synapses are stronger in the hippocampus of Rett syndrome mice due to altered synaptic trafficking of AMPA-type glutamate receptors Wei Li, Xin Xu, and Lucas Pozzo-Miller Importin-7 mediates memory consolidation through regulation of nuclear translocation of training-activated MAPK in Drosophila Qian Li, Xuchen Zhang, Wantong Hu, Xitong Liang, Fang Zhang, Lianzhang Wang, Zhong-Jian Liu, and Yi Zhong Acetylcholine receptors from human muscle as pharmacological targets for ALS therapy Eleonora Palma, Jorge Mauricio Reyes-Ruiz, Diego Lopergolo, Cristina Roseti, Cristina Bertollini, Gabriele Ruffolo, Pierangelo Cifelli, Emanuela Onesti, Cristina Limatola, Ricardo Miledi, and Maurizio Inghilleri Ablation of sensory neurons in a genetic model of pancreatic ductal adenocarcinoma slows initiation and progression of cancer  Jami L. Saloman, Kathryn M. Albers, Dongjun Li, Douglas J. Hartman, Howard C. Crawford, Emily A. Muha, Andrew D. Rhim, and Brian M. Davis Clues on the coding of reward cues by the nucleus accumbens Veronica A. Alvarez Biochemistry Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography  Yohta Fukuda, Ka Man Tse, Takanori Nakane, Toru Nakatsu, Mamoru Suzuki, Michihiro Sugahara, Shigeyuki Inoue, Tetsuya Masuda, Fumiaki Yumoto, Naohiro Matsugaki, Eriko Nango, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Changyong Song, Takaki Hatsui, Makina Yabashi, Osamu Nureki, Michael E. P. Murphy, Tsuyoshi Inoue, So Iwata, and Eiichi Mizohata Functional and topological diversity of LOV domain photoreceptors  Spencer T. Glantz, Eric J. Carpenter, Michael Melkonian, Kevin H. Gardner, Edward S. Boyden, Gane Ka-Shu Wong, and Brian Y. Chow Structure of an endogenous yeast 26S proteasome reveals two major conformational states  Bai Luan, Xiuliang Huang, Jianping Wu, Ziqing Mei, Yiwei Wang, Xiaobin Xue, Chuangye Yan, Jiawei Wang, Daniel J. Finley, Yigong Shi, and Feng Wang Inactivation of 3-hydroxybutyrate dehydrogenase 2 delays zebrafish erythroid maturation by conferring premature mitophagy Gangarao Davuluri, Ping Song, Zhuoming Liu, David Wald, Takuya F. Sakaguchi, Michael R. Green, and L. Devireddy Human DNMT1 transition state structure Quan Du, Zhen Wang, and Vern L. Schramm Novel genomic island modifies DNA with 7-deazaguanine derivatives Jennifer J. Thiaville, Stefanie M. Kellner, Yifeng Yuan, Geoffrey Hutinet, Patrick C. Thiaville, Watthanachai Jumpathong, Susovan Mohapatra, Celine Brochier-Armanet, Andrey V. Letarov, Roman Hillebrand, Chanchal K. Malik, Carmelo J. Rizzo, Peter C. Dedon, and Valérie de Crécy-Lagard Clinical activity of ceritinib in ROS1-rearranged non-small cell lung cancer: Bench to bedside report Vivek Subbiah, David S. Hong, and Funda Meric-Bernstam ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses  Ming-Yan Cheung, Xiaorong Li, Rui Miao, Yu-Hang Fong, Kwan-Pok Li, Yuk-Lin Yung, Mei-Hui Yu, Kam-Bo Wong, Zhongzhou Chen, and Hon-Ming Lam Biophysics and Computational Biology Mitochondrial Hsp90 is a ligand-activated molecular chaperone coupling ATP binding to dimer closure through a coiled-coil intermediate Nuri Sung, Jungsoon Lee, Ji-Hyun Kim, Changsoo Chang, Andrzej Joachimiak, Sukyeong Lee, and Francis T. F. Tsai Mean deformation metrics for quantifying 3D cell–matrix interactions without requiring information about matrix material properties David A. Stout, Eyal Bar-Kochba, Jonathan B. Estrada, Jennet Toyjanova, Haneesh Kesari, Jonathan S. Reichner, and Christian Franck Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography  Yohta Fukuda, Ka Man Tse, Takanori Nakane, Toru Nakatsu, Mamoru Suzuki, Michihiro Sugahara, Shigeyuki Inoue, Tetsuya Masuda, Fumiaki Yumoto, Naohiro Matsugaki, Eriko Nango, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Changyong Song, Takaki Hatsui, Makina Yabashi, Osamu Nureki, Michael E. P. Murphy, Tsuyoshi Inoue, So Iwata, and Eiichi Mizohata Spectral gap optimization of order parameters for sampling complex molecular systems Pratyush Tiwary and B. J. Berne Role of bacteriophage T4 baseplate in regulating assembly and infection Moh Lan Yap, Thomas Klose, Fumio Arisaka, Jeffrey A. Speir, David Veesler, Andrei Fokine, and Michael G. Rossmann Mechanisms of backtrack recovery by RNA polymerases I and II  Ana Lisica, Christoph Engel, Marcus Jahnel, Édgar Roldán, Eric A. Galburt, Patrick Cramer, and Stephan W. Grill Biophysical principles predict fitness landscapes of drug resistance João V. Rodrigues, Shimon Bershtein, Annabel Li, Elena R. Lozovsky, Daniel L. Hartl, and Eugene I. Shakhnovich Actomyosin dynamics drive local membrane component organization in an in vitro active composite layer Darius Vasco Köster, Kabir Husain, Elda Iljazi, Abrar Bhat, Peter Bieling, R. Dyche Mullins, Madan Rao, and Satyajit Mayor Mushrooms use convectively created airflows to disperse their spores Emilie Dressaire, Lisa Yamada, Boya Song, and Marcus Roper Fiber networks amplify active stress Pierre Ronceray, Chase P. Broedersz, and Martin Lenz Physics Pressure-induced superconductivity in a three-dimensional topological material ZrTe5 Yonghui Zhou, Juefei Wu, Wei Ning, Nana Li, Yongping Du, Xuliang Chen, Ranran Zhang, Zhenhua Chi, Xuefei Wang, Xiangde Zhu, Pengchao Lu, Cheng Ji, Xiangang Wan, Zhaorong Yang, Jian Sun, Wenge Yang, Mingliang Tian, Yuheng Zhang, and Ho-kwang Mao Cell Biology Dynamics inside the cancer cell attractor reveal cell heterogeneity, limits of stability, and escape  Qin Li, Anders Wennborg, Erik Aurell, Erez Dekel, Jie-Zhi Zou, Yuting Xu, Sui Huang, and Ingemar Ernberg Regulation of seminiferous tubule-associated stem Leydig cells in adult rat testes Xiaoheng Li, Zhao Wang, Zhenming Jiang, Jingjing Guo, Yuxi Zhang, Chenhao Li, Jinyong Chung, Janet Folmer, June Liu, Qingquan Lian, Renshan Ge, Barry R. Zirkin, and Haolin Chen Two distinct cytokinesis pathways drive trypanosome cell division initiation from opposite cell ends Qing Zhou, Jianhua Gu, Zhao-Rong Lun, Francisco J. Ayala, and Ziyin Li Physiology Junctophilin-4, a component of the endoplasmic reticulum–plasma membrane junctions, regulates Ca2+ dynamics in T cells Jin Seok Woo, Sonal Srikanth, Miyuki Nishi, Peipei Ping, Hiroshi Takeshima, and Yousang Gwack Chemistry Self-assembly of alkynylplatinum(II) terpyridine amphiphiles into nanostructures via steric control and metal–metal interactions Sammual Yu-Lut Leung, Keith Man-Chung Wong, and Vivian Wing-Wah Yam Composite lithium metal anode by melt infusion of lithium into a 3D conducting scaffold with lithiophilic coating Zheng Liang, Dingchang Lin, Jie Zhao, Zhenda Lu, Yayuan Liu, Chong Liu, Yingying Lu, Haotian Wang, Kai Yan, Xinyong Tao, and Yi Cui Spectral gap optimization of order parameters for sampling complex molecular systems Pratyush Tiwary and B. J. Berne Efficient delivery of genome-editing proteins using bioreducible lipid nanoparticles Ming Wang, John A. Zuris, Fantao Meng, Holly Rees, Shuo Sun, Pu Deng, Yong Han, Xue Gao, Dimitra Pouli, Qi Wu, Irene Georgakoudi, David R. Liu, and Qiaobing Xu Gold surfaces and nanoparticles are protected by Au(0)–thiyl species and are destroyed when Au(I)–thiolates form  Jeffrey R. Reimers, Michael J. Ford, Arnab Halder, Jens Ulstrup, and Noel S. Hush Structural basis for DNA cleavage by the potent antiproliferative agent (–)-lomaiviticin A Christina M. Woo, Zhenwu Li, Eric K. Paulson, and Seth B. Herzon Plant Biology Arabidopsis type B cytokinin response regulators ARR1, ARR10, and ARR12 negatively regulate plant responses to drought  Kien Huu Nguyen, Chien Van Ha, Rie Nishiyama, Yasuko Watanabe, Marco Antonio Leyva-González, Yasunari Fujita, Uven Thi Tran, Weiqiang Li, Maho Tanaka, Motoaki Seki, G. Eric Schaller, Luis Herrera-Estrella, and Lam-Son Phan Tran Cyclic nucleotide-gated channel 18 is an essential Ca2+ channel in pollen tube tips for pollen tube guidance to ovules in Arabidopsis Qi-Fei Gao, Li-Li Gu, Hui-Qin Wang, Cui-Fang Fei, Xiang Fang, Jamshaid Hussain, Shu-Jing Sun, Jing-Yun Dong, Hongtao Liu, and Yong-Fei Wang Developmental Biology Paracrine Wnt/β-catenin signaling mediates proliferation of undifferentiated spermatogonia in the adult mouse testis  Hinako M. Takase and Roeland Nusse FOXC1 maintains the hair follicle stem cell niche and governs stem cell quiescence to preserve long-term tissue-regenerating potential  Kenneth Lay, Tsutomu Kume, and Elaine Fuchs Earth, Atmospheric, and Planetary Sciences Continued emissions of carbon tetrachloride from the United States nearly two decades after its phaseout for dispersive uses  Lei Hu, Stephen A. Montzka, Ben R. Miller, Arlyn E. Andrews, John B. Miller, Scott J. Lehman, Colm Sweeney, Scot M. Miller, Kirk Thoning, Carolina Siso, Elliot L. Atlas, Donald R. Blake, Joost de Gouw, Jessica B. Gilman, Geoff Dutton, James W. Elkins, Bradley Hall, Huilin Chen, Marc L. Fischer, Marikate E. Mountain, Thomas Nehrkorn, Sebastien C. Biraud, Fred L. Moore, and Pieter Tans Tungsten isotopic constraints on the age and origin of chondrules Gerrit Budde, Thorsten Kleine, Thomas S. Kruijer, Christoph Burkhardt, and Knut Metzler Challenges in constraining anthropogenic aerosol effects on cloud radiative forcing using present-day spatiotemporal variability Steven Ghan, Minghuai Wang, Shipeng Zhang, Sylvaine Ferrachat, Andrew Gettelman, Jan Griesfeller, Zak Kipling, Ulrike Lohmann, Hugh Morrison, David Neubauer, Daniel G. Partridge, Philip Stier, Toshihiko Takemura, Hailong Wang, and Kai Zhang Psychological and Cognitive Sciences Unnatural paradigm calls into question whether macaques' social decisions represent empathy Katherine A. Cronin Reply to Cronin: Consistency between decision-making, gaze, and natural social behavior validates inferences on macaque social cognition Sebastien Ballesta and Jean-René Duhamel Economic irrationality is optimal during noisy decision making  Konstantinos Tsetsos, Rani Moran, James Moreland, Nick Chater, Marius Usher, and Christopher Summerfield Ecology Mixotrophy stirs up our understanding of marine food webs David A. Caron Insights into global diatom distribution and diversity in the world's ocean  Shruti Malviya, Eleonora Scalco, Stéphane Audic, Flora Vincent, Alaguraj Veluchamy, Julie Poulain, Patrick Wincker, Daniele Iudicone, Colomban de Vargas, Lucie Bittner, Adriana Zingone, and Chris Bowler Global change and terrestrial plant community dynamics   Janet Franklin, Josep M. Serra-Diaz, Alexandra D. Syphard, and Helen M. Regan Engineering Mean deformation metrics for quantifying 3D cell–matrix interactions without requiring information about matrix material properties David A. Stout, Eyal Bar-Kochba, Jonathan B. Estrada, Jennet Toyjanova, Haneesh Kesari, Jonathan S. Reichner, and Christian Franck Material heterogeneity in cancellous bone promotes deformation recovery after mechanical failure Ashley M. Torres, Jonathan B. Matheny, Tony M. Keaveny, David Taylor, Clare M. Rimnac, and Christopher J. Hernandez Sustainability Science Impacts of nonstate, market-driven governance on Chilean forests  Robert Heilmayr and Eric F. Lambin Environmental Sciences Oil dispersants do facilitate biodegradation of spilled oil Roger C. Prince, Thomas S. Coolbaugh, and Thomas F. Parkerton Reply to Prince et al.: Ability of chemical dispersants to reduce oil spill impacts remains unclear Sara Kleindienst, Michael Seidel, Kai Ziervogel, Sharon Grim, Kathy Loftis, Sarah Harrison, Sairah Y. Malkin, Matthew J. Perkins, Jennifer Field, Mitchell L. Sogin, Thorsten Dittmar, Uta Passow, Patricia Medeiros, and Samantha B. Joye Mixotrophy stirs up our understanding of marine food webs David A. Caron Quantifying dispersal from hydrothermal vent fields in the western Pacific Ocean  Satoshi Mitarai, Hiromi Watanabe, Yuichi Nakajima, Alexander F. Shchepetkin, and James C. McWilliams Risk assessment of radioisotope contamination for aquatic living resources in and around Japan  Hiroshi Okamura, Shiro Ikeda, Takami Morita, and Shinto Eguchi Although critical, carbon choices alone do not determine the fate of coastal cities Ezra Boyd, Vincenzo Pasquantonio, Frank Rabalais, and Scott Eustis Reply to Boyd et al.: Large long-term sea level projections do not mean giving up on coastal cities Benjamin H. Strauss, Scott Kulp, and Anders Levermann Systems Biology Early signaling dynamics of the epidermal growth factor receptor Raven J. Reddy, Aaron S. Gajadhar, Eric J. Swenson, Daniel A. Rothenberg, Timothy G. Curran, and Forest M. White Crosstalk between the lipopolysaccharide and phospholipid pathways during outer membrane biogenesis in Escherichia coli  Akintunde Emiola, Steven S. Andrews, Carolin Heller, and John George Evolution Fuxianhuiid ventral nerve cord and early nervous system evolution in Panarthropoda Jie Yang, Javier Ortega-Hernández, Nicholas J. Butterfield, Yu Liu, George S. Boyan, Jin-bo Hou, Tian Lan, and Xi-guang Zhang Partial connectivity increases cultural accumulation within groups Maxime Derex and Robert Boyd In This Issue In This Issue Letters and Replies Oil dispersants do facilitate biodegradation of spilled oil Roger C. Prince, Thomas S. Coolbaugh, and Thomas F. Parkerton Reply to Prince et al.: Ability of chemical dispersants to reduce oil spill impacts remains unclear Sara Kleindienst, Michael Seidel, Kai Ziervogel, Sharon Grim, Kathy Loftis, Sarah Harrison, Sairah Y. Malkin, Matthew J. Perkins, Jennifer Field, Mitchell L. Sogin, Thorsten Dittmar, Uta Passow, Patricia Medeiros, and Samantha B. Joye Alzheimer's disease CD33 rs3865444 variant does not contribute to cognitive performance Guiyou Liu and Qinghua Jiang Reply to Liu and Jiang: Maintenance of postreproductive cognitive capacity by inclusive fitness Stevan A. Springer, Flavio Schwarz, Tasha K. Altheide, Nissi M. Varki, Ajit Varki, and Pascal Gagneux Unnatural paradigm calls into question whether macaques' social decisions represent empathy Katherine A. Cronin Reply to Cronin: Consistency between decision-making, gaze, and natural social behavior validates inferences on macaque social cognition Sebastien Ballesta and Jean-René Duhamel Clinical activity of ceritinib in ROS1-rearranged non-small cell lung cancer: Bench to bedside report Vivek Subbiah, David S. Hong, and Funda Meric-Bernstam Although critical, carbon choices alone do not determine the fate of coastal cities Ezra Boyd, Vincenzo Pasquantonio, Frank Rabalais, and Scott Eustis Reply to Boyd et al.: Large long-term sea level projections do not mean giving up on coastal cities Benjamin H. Strauss, Scott Kulp, and Anders Levermann Open Access From the Cover Inaugural Article Classic Cozzarelli Prize Winner Front Matter This message was sent to pascal.alter@gmail.com. (....) Copyright © 2016 by the National Academy of Sciences