piątek, 30 stycznia 2015

Fwd: PNAS Early Edition for 28 Jan 2015


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From: <pnas-mailer@alerts.stanford.edu>
Date: Thu, Jan 29, 2015 at 7:48 AM
Subject: PNAS Early Edition for 28 Jan 2015
To: pascal.alter@gmail.com


PNAS    Proceedings of the National Academy of Sciences
Letters (Online Only)
Reply to Constantin-Teodosiu et al.: Mice with genetic PDH activation are not protected from high-fat diet–induced muscle insulin resistance
Max C. Petersen, Yasmeen Rahimi, Joao-Paulo G. Camporez, Dominik Pesta, Rachel J. Perry, Michael J. Jurczak, Gary W. Cline, and Gerald I. Shulman

Retrospective
Herman N. Eisen: Mentor to many
David M. Kranz and Yuri Sykulev

Commentaries
Seeing is believing: Dynamic evolution of gene families
Rayna M. Harris and Hans A. Hofmann

Physical Sciences
Applied Physical Sciences
Charge disproportionation and the pressure-induced insulator–metal transition in cubic perovskite PbCrO3
Jinguang Cheng, K. E. Kweon, S. A. Larregola, Yang Ding, Y. Shirako, L. G. Marshall, Z.-Y. Li, X. Li, António M. dos Santos, M. R. Suchomel, K. Matsubayashi, Y. Uwatoko, G. S. Hwang, John B. Goodenough, and J.-S. Zhou
Knot theory realizations in nematic colloids
Simon Čopar, Uroš Tkalec, Igor Muševič, and Slobodan Žumer
Chemistry
Quinary structure modulates protein stability in cells
William B. Monteith, Rachel D. Cohen, Austin E. Smith, Emilio Guzman-Cisneros, and Gary J. Pielak
Earth, Atmospheric, and Planetary Sciences
Chemical signature of magnetotactic bacteria
Matthieu Amor, Vincent Busigny, Mickaël Durand-Dubief, Mickaël Tharaud, Georges Ona-Nguema, Alexandre Gélabert, Edouard Alphandéry, Nicolas Menguy, Marc F. Benedetti, Imène Chebbi, and François Guyot
Cultural implications of late Holocene climate change in the Cuenca Oriental, Mexico
Tripti Bhattacharya, Roger Byrne, Harald Böhnel, Kurt Wogau, Ulrike Kienel, B. Lynn Ingram, and Susan Zimmerman
Methane emissions from natural gas infrastructure and use in the urban region of Boston, Massachusetts Open Access Article
Kathryn McKain, Adrian Down, Steve M. Raciti, John Budney, Lucy R. Hutyra, Cody Floerchinger, Scott C. Herndon, Thomas Nehrkorn, Mark S. Zahniser, Robert B. Jackson, Nathan Phillips, and Steven C. Wofsy
Engineering
Optical antenna enhanced spontaneous emission Open Access Article
Michael S. Eggleston, Kevin Messer, Liming Zhang, Eli Yablonovitch, and Ming C. Wu
Anti-vascular endothelial growth factor treatment normalizes tuberculosis granuloma vasculature and improves small molecule delivery Open Access Article
Meenal Datta, Laura E. Via, Walid S. Kamoun, Chong Liu, Wei Chen, Giorgio Seano, Danielle M. Weiner, Daniel Schimel, Kathleen England, John D. Martin, Xing Gao, Lei Xu, Clifton E. Barry III, and Rakesh K. Jain
Environmental Sciences
Physics
Optically driven translational and rotational motions of microrod particles in a nematic liquid crystal
Alexey Eremin, Pemika Hirankittiwong, Nattaporn Chattham, Hajnalka Nádasi, Ralf Stannarius, Jumras Limtrakul, Osamu Haba, Koichiro Yonetake, and Hideo Takezoe

Social Sciences
Anthropology
Cranial vault trauma and selective mortality in medieval to early modern Denmark
Jesper L. Boldsen, George R. Milner, and Svenja Weise
Cultural implications of late Holocene climate change in the Cuenca Oriental, Mexico
Tripti Bhattacharya, Roger Byrne, Harald Böhnel, Kurt Wogau, Ulrike Kienel, B. Lynn Ingram, and Susan Zimmerman
Psychological and Cognitive Sciences
Sustainability Science
Methane emissions from natural gas infrastructure and use in the urban region of Boston, Massachusetts Open Access Article
Kathryn McKain, Adrian Down, Steve M. Raciti, John Budney, Lucy R. Hutyra, Cody Floerchinger, Scott C. Herndon, Thomas Nehrkorn, Mark S. Zahniser, Robert B. Jackson, Nathan Phillips, and Steven C. Wofsy

Biological Sciences
Applied Biological Sciences
Identification of plant compounds that disrupt the insect juvenile hormone receptor complex
Seok-Hee Lee, Hyun-Woo Oh, Ying Fang, Saes-Byeol An, Doo-Sang Park, Hyuk-Hwan Song, Sei-Ryang Oh, Soo-Young Kim, Seonghyun Kim, Namjung Kim, Alexander S. Raikhel, Yeon Ho Je, and Sang Woon Shin
Biochemistry
Quinary structure modulates protein stability in cells
William B. Monteith, Rachel D. Cohen, Austin E. Smith, Emilio Guzman-Cisneros, and Gary J. Pielak
Direct inhibition of oncogenic KRAS by hydrocarbon-stapled SOS1 helices
Elizaveta S. Leshchiner, Andrey Parkhitko, Gregory H. Bird, James Luccarelli, Joseph A. Bellairs, Silvia Escudero, Kwadwo Opoku-Nsiah, Marina Godes, Norbert Perrimon, and Loren D. Walensky
Structural and biochemical studies of HCMV gH/gL/gO and Pentamer reveal mutually exclusive cell entry complexes Open Access Article
Claudio Ciferri, Sumana Chandramouli, Danilo Donnarumma, Pavel A. Nikitin, Michael A. Cianfrocco, Rachel Gerrein, Adam L. Feire, Susan W. Barnett, Anders E. Lilja, Rino Rappuoli, Nathalie Norais, Ethan C. Settembre, and Andrea Carfi
Structures and characterization of digoxin- and bufalin-bound Na+,K+-ATPase compared with the ouabain-bound complex
Mette Laursen, Jonas Lindholt Gregersen, Laure Yatime, Poul Nissen, and Natalya U. Fedosova
Src phosphorylation converts Mdm2 from a ubiquitinating to a neddylating E3 ligase
Christopher N. Batuello, Paula M. Hauck, Jaimie M. Gendron, Jason A. Lehman, and Lindsey D. Mayo
Bordetella pertussis fim3 gene regulation by BvgA: Phosphorylation controls the formation of inactive vs. active transcription complexes
Alice Boulanger, Kyung Moon, Kimberly B. Decker, Qing Chen, Leslie Knipling, Scott Stibitz, and Deborah M. Hinton
Cell Biology
BRAF inhibitor resistance mediated by the AKT pathway in an oncogenic BRAF mouse melanoma model Open Access Article
Daniele Perna, Florian A. Karreth, Alistair G. Rust, Pedro A. Perez-Mancera, Mamunur Rashid, Francesco Iorio, Constantine Alifrangis, Mark J. Arends, Marcus W. Bosenberg, Gideon Bollag, David A. Tuveson, and David J. Adams
Differential regulation of the Hippo pathway by adherens junctions and apical–basal cell polarity modules
Chih-Chao Yang, Hillary K. Graves, Ivan M. Moya, Chunyao Tao, Fisun Hamaratoglu, Andrew B. Gladden, and Georg Halder
p53 at the endoplasmic reticulum regulates apoptosis in a Ca2+-dependent manner
Carlotta Giorgi, Massimo Bonora, Giovanni Sorrentino, Sonia Missiroli, Federica Poletti, Jan M. Suski, Fabian Galindo Ramirez, Rosario Rizzuto, Francesco Di Virgilio, Ester Zito, Pier Paolo Pandolfi, Mariusz R. Wieckowski, Fabio Mammano, Giannino Del Sal, and Paolo Pinton
Inositol pyrophosphates promote tumor growth and metastasis by antagonizing liver kinase B1
Feng Rao, Jing Xu, Chenglai Fu, Jiyoung Y. Cha, Moataz M. Gadalla, Risheng Xu, James C. Barrow, and Solomon H. Snyder
Ecology
Evolution
Evolution of herbivory in Drosophilidae linked to loss of behaviors, antennal responses, odorant receptors, and ancestral diet
Benjamin Goldman-Huertas, Robert F. Mitchell, Richard T. Lapoint, Cécile P. Faucher, John G. Hildebrand, and Noah K. Whiteman
Genetics
Intrinsic biocontainment: Multiplex genome safeguards combine transcriptional and recombinational control of essential yeast genes Open Access Article
Yizhi Cai, Neta Agmon, Woo Jin Choi, Alba Ubide, Giovanni Stracquadanio, Katrina Caravelli, Haiping Hao, Joel S. Bader, and Jef D. Boeke
Immunology and Inflammation
Mitophagy confers resistance to siderophore-mediated killing by Pseudomonas aeruginosa Open Access Article
Natalia V. Kirienko, Frederick M. Ausubel, and Gary Ruvkun
CTCF-binding elements 1 and 2 in the Igh intergenic control region cooperatively regulate V(D)J recombination
Sherry G. Lin, Chunguang Guo, Arthur Su, Yu Zhang, and Frederick W. Alt
Functional capacities of human IgM memory B cells in early inflammatory responses and secondary germinal center reactions
Marc Seifert, Martina Przekopowitz, Sarah Taudien, Anna Lollies, Viola Ronge, Britta Drees, Monika Lindemann, Uwe Hillen, Harald Engler, Bernhard B. Singer, and Ralf Küppers
Immune-mediated antitumor effect by type 2 diabetes drug, metformin Open Access Article
Shingo Eikawa, Mikako Nishida, Shusaku Mizukami, Chihiro Yamazaki, Eiichi Nakayama, and Heiichiro Udono
The first step of peptide selection in antigen presentation by MHC class I molecules Open Access Article
Malgorzata A. Garstka, Alexander Fish, Patrick H. N. Celie, Robbie P. Joosten, George M. C. Janssen, Ilana Berlin, Rieuwert Hoppes, Magda Stadnik, Lennert Janssen, Huib Ovaa, Peter A. van Veelen, Anastassis Perrakis, and Jacques Neefjes
Effector Vγ9Vδ2 T cells dominate the human fetal γδ T-cell repertoire
Tanya Dimova, Margreet Brouwer, Françoise Gosselin, Joël Tassignon, Oberdan Leo, Catherine Donner, Arnaud Marchant, and David Vermijlen
Medical Sciences
Anti-vascular endothelial growth factor treatment normalizes tuberculosis granuloma vasculature and improves small molecule delivery Open Access Article
Meenal Datta, Laura E. Via, Walid S. Kamoun, Chong Liu, Wei Chen, Giorgio Seano, Danielle M. Weiner, Daniel Schimel, Kathleen England, John D. Martin, Xing Gao, Lei Xu, Clifton E. Barry III, and Rakesh K. Jain
Invasive breast cancer reprograms early myeloid differentiation in the bone marrow to generate immunosuppressive neutrophils
Amy-Jo Casbon, Damien Reynaud, Chanhyuk Park, Emily Khuc, Dennis D. Gan, Koen Schepers, Emmanuelle Passegué, and Zena Werb
GPR17 gene disruption does not alter food intake or glucose homeostasis in mice
Jason Mastaitis, Soo Min, Ralf Elvert, Aimo Kannt, Yurong Xin, Francisca Ochoa, Nicholas W. Gale, David M. Valenzuela, Andrew J. Murphy, George D. Yancopoulos, and Jesper Gromada
Microbiology
Pan-viral-microRNA screening identifies interferon inhibition as a common function of diverse viruses
Jennifer E. Cox, Lydia V. McClure, Andrei Goga, and Christopher S. Sullivan
Nostopeptolide plays a governing role during cellular differentiation of the symbiotic cyanobacterium Nostoc punctiforme
Anton Liaimer, Eric J. N. Helfrich, Katrin Hinrichs, Arthur Guljamow, Keishi Ishida, Christian Hertweck, and Elke Dittmann
Structure and mechanism of Staphylococcus aureus TarM, the wall teichoic acid α-glycosyltransferase
Solmaz Sobhanifar, Liam James Worrall, Robert J. Gruninger, Gregory A. Wasney, Markus Blaukopf, Lars Baumann, Emilie Lameignere, Matthew Solomonson, Eric D. Brown, Stephen G. Withers, and Natalie C. J. Strynadka
Flagella-independent surface motility in Salmonella enterica serovar Typhimurium
Sun-Yang Park, Mauricio H. Pontes, and Eduardo A. Groisman
Neuroscience
PTPσ functions as a presynaptic receptor for the glypican-4/LRRTM4 complex and is essential for excitatory synaptic transmission
Ji Seung Ko, Gopal Pramanik, Ji Won Um, Ji Seon Shim, Dongmin Lee, Kee Hun Kim, Gug-Young Chung, Giuseppe Condomitti, Ho Min Kim, Hyun Kim, Joris de Wit, Kang-Sik Park, Katsuhiko Tabuchi, and Jaewon Ko
Therapeutic mechanisms of high-frequency stimulation in Parkinson's disease and neural restoration via loop-based reinforcement
Sabato Santaniello, Michelle M. McCarthy, Erwin B. Montgomery Jr., John T. Gale, Nancy Kopell, and Sridevi V. Sarma
Sound representation in higher language areas during language generation
Lorenzo Magrassi, Giuseppe Aromataris, Alessandro Cabrini, Valerio Annovazzi-Lodi, and Andrea Moro
Plant Biology
Dual roles of an Arabidopsis ESCRT component FREE1 in regulating vacuolar protein transport and autophagic degradation
Caiji Gao, Xiaohong Zhuang, Yong Cui, Xi Fu, Yilin He, Qiong Zhao, Yonglun Zeng, Jinbo Shen, Ming Luo, and Liwen Jiang
Systems Biology
Metabolic theory predicts whole-ecosystem properties
John R. Schramski, Anthony I. Dell, John M. Grady, Richard M. Sibly, and James H. Brown

Corrections
Open Access
From the Cover
Inaugural Article
Classic
Cozzarelli Prize Winner
Front Matter

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