Fwd: PNAS Early Edition for 31 Dec 2014

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Proceedings of the National Academy of Sciences Early Edition articles for 31 December 2014 Letters (Online Only) Should we "reef" obsolete oil platforms? Ashley M. Fowler, Peter I. Macreadie, and David J. Booth Assessing maize genetic erosion Stephen B. Brush, Mauricio R. Bellon, Robert J. Hijmans, Quetzalcoatl Orozco Ramirez, Hugo R. Perales, and Jacob van Etten Reply to Brush et al.: Wake-up call for crop conservation science George A. Dyer, Alejandro López-Feldman, Antonio Yúnez-Naude, J. Edward Taylor, and Jeffrey Ross-Ibarra Profile Profile of Carolina Barillas-Mury Paul Gabrielsen Commentaries Ferment in the family tree Nathaniel J. Dominy A promising approach to molecular counting problem in superresolution microscopy Jin Wang Physical Sciences Applied Physical Sciences Percolation transition in dynamical traffic network with evolving critical bottlenecks Daqing Li, Bowen Fu, Yunpeng Wang, Guangquan Lu, Yehiel Berezin, H. Eugene Stanley, and Shlomo Havlin Chemistry Imaging local electric fields produced upon synchrotron X-ray exposure Christopher M. Dettmar, Justin A. Newman, Scott J. Toth, Michael Becker, Robert F. Fischetti, and Garth J. Simpson Plasmonic photonic crystals realized through DNA-programmable assembly Daniel J. Park, Chuan Zhang, Jessie C. Ku, Yu Zhou, George C. Schatz, and Chad A. Mirkin Earth, Atmospheric, and Planetary Sciences Effect of increasing CO2 on the terrestrial carbon cycle David Schimel, Britton B. Stephens, and Joshua B. Fisher Spatiotemporal variations of seismicity before major earthquakes in the Japanese area and their relation with the epicentral locations Nicholas V. Sarlis, Efthimios S. Skordas, Panayiotis A. Varotsos, Toshiyasu Nagao, Masashi Kamogawa, and Seiya Uyeda Engineering Oxidation-driven surface dynamics on NiAl(100)  Hailang Qin, Xidong Chen, Liang Li, Peter W. Sutter, and Guangwen Zhou Detecting nanoscale vibrations as signature of life Sandor Kasas, Francesco Simone Ruggeri, Carine Benadiba, Caroline Maillard, Petar Stupar, Hélène Tournu, Giovanni Dietler, and Giovanni Longo Environmental Sciences Arrival of the Fukushima radioactivity plume in North American continental waters  John N. Smith, Robin M. Brown, William J. Williams, Marie Robert, Richard Nelson, and S. Bradley Moran Physics Granular impact cratering by liquid drops: Understanding raindrop imprints through an analogy to asteroid strikes Runchen Zhao, Qianyun Zhang, Hendro Tjugito, and Xiang Cheng Social Sciences Anthropology Warfare and reproductive success in a tribal population Luke Glowacki and Richard Wrangham Environmental Sciences Percolation transition in dynamical traffic network with evolving critical bottlenecks Daqing Li, Bowen Fu, Yunpeng Wang, Guangquan Lu, Yehiel Berezin, H. Eugene Stanley, and Shlomo Havlin Psychological and Cognitive Sciences Direct coupling of haptic signals between hands  Lucile Dupin, Vincent Hayward, and Mark Wexler Social Sciences Cohort of birth modifies the association between FTO genotype and BMI James Niels Rosenquist, Steven F. Lehrer, A. James O'Malley, Alan M. Zaslavsky, Jordan W. Smoller, and Nicholas A. Christakis Biological Sciences Applied Biological Sciences Detecting nanoscale vibrations as signature of life Sandor Kasas, Francesco Simone Ruggeri, Carine Benadiba, Caroline Maillard, Petar Stupar, Hélène Tournu, Giovanni Dietler, and Giovanni Longo Biochemistry Mechanism by which a recently discovered allosteric inhibitor blocks glutamine metabolism in transformed cells Clint A. Stalnecker, Scott M. Ulrich, Yunxing Li, Sekar Ramachandran, Mary Kate McBrayer, Ralph J. DeBerardinis, Richard A. Cerione, and Jon W. Erickson Human mutations in methylenetetrahydrofolate dehydrogenase 1 impair nuclear de novo thymidylate biosynthesis Martha S. Field, Elena Kamynina, David Watkins, David S. Rosenblatt, and Patrick J. Stover Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis Tateki Suzuki, Akiyoshi Nakamura, Koji Kato, Dieter Söll, Isao Tanaka, Kelly Sheppard, and Min Yao Crystal structures of alkylperoxo and anhydride intermediates in an intradiol ring-cleaving dioxygenase Cory J. Knoot, Vincent M. Purpero, and John D. Lipscomb Biophysics and Computational Biology Trigger loop folding determines transcription rate of Escherichia coli's RNA polymerase  Yara X. Mejia, Evgeny Nudler, and Carlos Bustamante Protein design algorithms predict viable resistance to an experimental antifolate Stephanie M. Reeve, Pablo Gainza, Kathleen M. Frey, Ivelin Georgiev, Bruce R. Donald, and Amy C. Anderson β-Helical architecture of cytoskeletal bactofilin filaments revealed by solid-state NMR Suresh Vasa, Lin Lin, Chaowei Shi, Birgit Habenstein, Dietmar Riedel, Juliane Kühn, Martin Thanbichler, and Adam Lange Structure of CrgA, a cell division structural and regulatory protein from Mycobacterium tuberculosis, in lipid bilayers Nabanita Das, Jian Dai, Ivan Hung, Malini R. Rajagopalan, Huan-Xiang Zhou, and Timothy A. Cross Bacterial growth laws reflect the evolutionary importance of energy efficiency  Arijit Maitra and Ken A. Dill Cell Biology INK4 locus of the tumor-resistant rodent, the naked mole rat, expresses a functional p15/p16 hybrid isoform Xiao Tian, Jorge Azpurua, Zhonghe Ke, Adeline Augereau, Zhengdong D. Zhang, Jan Vijg, Vadim N. Gladyshev, Vera Gorbunova, and Andrei Seluanov Lunapark stabilizes nascent three-way junctions in the endoplasmic reticulum Shuliang Chen, Tanvi Desai, James A. McNew, Patrick Gerard, Peter J. Novick, and Susan Ferro-Novick Remodeling of intermediate metabolism in the diatom Phaeodactylum tricornutum under nitrogen stress Orly Levitan, Jorge Dinamarca, Ehud Zelzion, Desmond S. Lun, L. Tiago Guerra, Min Kyung Kim, Joomi Kim, Benjamin A. S. Van Mooy, Debashish Bhattacharya, and Paul G. Falkowski Developmental Biology β-Catenin–related protein WRM-1 is a multifunctional regulatory subunit of the LIT-1 MAPK complex Xiao-Dong Yang, Tejas R. Karhadkar, Jessica Medina, Scott M. Robertson, and Rueyling Lin Fnip1 regulates skeletal muscle fiber type specification, fatigue resistance, and susceptibility to muscular dystrophy Nicholas L. Reyes, Glen B. Banks, Mark Tsang, Daciana Margineantu, Haiwei Gu, Danijel Djukovic, Jacky Chan, Michelle Torres, H. Denny Liggitt, Dinesh K. Hirenallur-S, David M. Hockenbery, Daniel Raftery, and Brian M. Iritani Ecology Parasitism alters three power laws of scaling in a metazoan community: Taylor's law, density-mass allometry, and variance-mass allometry Clément Lagrue, Robert Poulin, and Joel E. Cohen The global distribution of diet breadth in insect herbivores  Matthew L. Forister, Vojtech Novotny, Anna K. Panorska, Leontine Baje, Yves Basset, Philip T. Butterill, Lukas Cizek, Phyllis D. Coley, Francesca Dem, Ivone R. Diniz, Pavel Drozd, Mark Fox, Andrea E. Glassmire, Rebecca Hazen, Jan Hrcek, Joshua P. Jahner, Ondrej Kaman, Tomasz J. Kozubowski, Thomas A. Kursar, Owen T. Lewis, John Lill, Robert J. Marquis, Scott E. Miller, Helena C. Morais, Masashi Murakami, Herbert Nickel, Nicholas A. Pardikes, Robert E. Ricklefs, Michael S. Singer, Angela M. Smilanich, John O. Stireman, Santiago Villamarín-Cortez, Stepan Vodka, Martin Volf, David L. Wagner, Thomas Walla, George D. Weiblen, and Lee A. Dyer Effect of increasing CO2 on the terrestrial carbon cycle David Schimel, Britton B. Stephens, and Joshua B. Fisher Experiment, monitoring, and gradient methods used to infer climate change effects on plant communities yield consistent patterns Sarah C. Elmendorf, Gregory H. R. Henry, Robert D. Hollister, Anna Maria Fosaa, William A. Gould, Luise Hermanutz, Annika Hofgaard, Ingibjörg I. Jónsdóttir, Janet C. Jorgenson, Esther Lévesque, Borgþór Magnusson, Ulf Molau, Isla H. Myers-Smith, Steven F. Oberbauer, Christian Rixen, Craig E. Tweedie, and Marilyn Walker Environmental Sciences Cryptic carbon and sulfur cycling between surface ocean plankton Bryndan P. Durham, Shalabh Sharma, Haiwei Luo, Christa B. Smith, Shady A. Amin, Sara J. Bender, Stephen P. Dearth, Benjamin A. S. Van Mooy, Shawn R. Campagna, Elizabeth B. Kujawinski, E. Virginia Armbrust, and Mary Ann Moran Evolution Ancestral duplications and highly dynamic opsin gene evolution in percomorph fishes  Fabio Cortesi, Zuzana Musilová, Sara M. Stieb, Nathan S. Hart, Ulrike E. Siebeck, Martin Malmstrøm, Ole K. Tørresen, Sissel Jentoft, Karen L. Cheney, N. Justin Marshall, Karen L. Carleton, and Walter Salzburger Directional selection can drive the evolution of modularity in complex traits  Diogo Melo and Gabriel Marroig Adaptive simplification and the evolution of gecko locomotion: Morphological and biomechanical consequences of losing adhesion Timothy E. Higham, Aleksandra V. Birn-Jeffery, Clint E. Collins, C. Darrin Hulsey, and Anthony P. Russell Genetics Cohort of birth modifies the association between FTO genotype and BMI James Niels Rosenquist, Steven F. Lehrer, A. James O'Malley, Alan M. Zaslavsky, Jordan W. Smoller, and Nicholas A. Christakis Immunology and Inflammation Intracellular osteopontin regulates homeostasis and function of natural killer cells Jianmei W. Leavenworth, Bert Verbinnen, Qin Wang, Erxia Shen, and Harvey Cantor Appearance and disappearance of the mRNA signature characteristic of Treg cells in visceral adipose tissue: Age, diet, and PPARγ effects Daniela Cipolletta, Paul Cohen, Bruce M. Spiegelman, Christophe Benoist, and Diane Mathis Activated CD4+CCR5+ T cells in the rectum predict increased SIV acquisition in SIVGag/Tat-vaccinated rhesus macaques  Diane G. Carnathan, Katherine S. Wetzel, Joana Yu, S. Thera Lee, Brent A. Johnson, Mirko Paiardini, Jian Yan, Matthew P. Morrow, Niranjan Y. Sardesai, David B. Weiner, Hildegund C. J. Ertl, and Guido Silvestri Inducible RNAi in vivo reveals that the transcription factor BATF is required to initiate but not maintain CD8+ T-cell effector differentiation Jernej Godec, Glenn S. Cowley, R. Anthony Barnitz, David E. Root, Arlene H. Sharpe, and W. Nicholas Haining Immunological consequences of intragenus conservation of Mycobacterium tuberculosis T-cell epitopes Cecilia S. Lindestam Arlehamn, Sinu Paul, Federico Mele, Charlie Huang, Jason A. Greenbaum, Randi Vita, John Sidney, Bjoern Peters, Federica Sallusto, and Alessandro Sette HLA ligandome analysis identifies the underlying specificities of spontaneous antileukemia immune responses in chronic lymphocytic leukemia (CLL)  Daniel J. Kowalewski, Heiko Schuster, Linus Backert, Claudia Berlin, Stefan Kahn, Lothar Kanz, Helmut R. Salih, Hans-Georg Rammensee, Stefan Stevanovic, and Juliane Sarah Stickel Controlled analysis of nanoparticle charge on mucosal and systemic antibody responses following pulmonary immunization Catherine A. Fromen, Gregory R. Robbins, Tammy W. Shen, Marc P. Kai, Jenny P. Y. Ting, and Joseph M. DeSimone CTLA-4 controls follicular helper T-cell differentiation by regulating the strength of CD28 engagement  Chun Jing Wang, Frank Heuts, Vitalijs Ovcinnikovs, Lukasz Wardzinski, Chantelle Bowers, Emily M. Schmidt, Alexandros Kogimtzis, Rupert Kenefeck, David M. Sansom, and Lucy S. K. Walker miR-155 augments CD8+ T-cell antitumor activity in lymphoreplete hosts by enhancing responsiveness to homeostatic γc cytokines Yun Ji, Claudia Wrzesinski, Zhiya Yu, Jinhui Hu, Sanjivan Gautam, Nga V. Hawk, William G. Telford, Douglas C. Palmer, Zulmarie Franco, Madhusudhanan Sukumar, Rahul Roychoudhuri, David Clever, Christopher A. Klebanoff, Charles D. Surh, Thomas A. Waldmann, Nicholas P. Restifo, and Luca Gattinoni Polymeric synthetic nanoparticles for the induction of antigen-specific immunological tolerance  Roberto A. Maldonado, Robert A. LaMothe, Joseph D. Ferrari, Ai-Hong Zhang, Robert J. Rossi, Pallavi N. Kolte, Aaron P. Griset, Conlin O'Neil, David H. Altreuter, Erica Browning, Lloyd Johnston, Omid C. Farokhzad, Robert Langer, David W. Scott, Ulrich H. von Andrian, and Takashi Kei Kishimoto Medical Sciences Inhibition of soluble epoxide hydrolase modulates inflammation and autophagy in obese adipose tissue and liver: Role for omega-3 epoxides Cristina López-Vicario, José Alcaraz-Quiles, Verónica García-Alonso, Bibiana Rius, Sung H. Hwang, Esther Titos, Aritz Lopategi, Bruce D. Hammock, Vicente Arroyo, and Joan Clària MSCs derived from iPSCs with a modified protocol are tumor-tropic but have much less potential to promote tumors than bone marrow MSCs Qingguo Zhao, Carl A. Gregory, Ryang Hwa Lee, Roxanne L. Reger, Lizheng Qin, Bo Hai, Min Sung Park, Nara Yoon, Bret Clough, Eoin McNeill, Darwin J. Prockop, and Fei Liu A red meat-derived glycan promotes inflammation and cancer progression Annie N. Samraj, Oliver M. T. Pearce, Heinz Läubli, Alyssa N. Crittenden, Anne K. Bergfeld, Kalyan Banda, Christopher J. Gregg, Andrea E. Bingman, Patrick Secrest, Sandra L. Diaz, Nissi M. Varki, and Ajit Varki Microbiology Plasmodium falciparum evades mosquito immunity by disrupting JNK-mediated apoptosis of invaded midgut cells   Urvashi N. Ramphul, Lindsey S. Garver, Alvaro Molina-Cruz, Gaspar E. Canepa, and Carolina Barillas-Mury Dialkylresorcinols as bacterial signaling molecules Sophie Brameyer, Darko Kresovic, Helge B. Bode, and Ralf Heermann The polarity of myxobacterial gliding is regulated by direct interactions between the gliding motors and the Ras homolog MglA Beiyan Nan, Jigar N. Bandaria, Kathy Y. Guo, Xue Fan, Amirpasha Moghtaderi, Ahmet Yildiz, and David R. Zusman Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells  David Berry, Esther Mader, Tae Kwon Lee, Dagmar Woebken, Yun Wang, Di Zhu, Marton Palatinszky, Arno Schintlmeister, Markus C. Schmid, Buck T. Hanson, Naama Shterzer, Itzhak Mizrahi, Isabella Rauch, Thomas Decker, Thomas Bocklitz, Jürgen Popp, Christopher M. Gibson, Patrick W. Fowler, Wei E. Huang, and Michael Wagner The chemistry of negotiation: Rhythmic, glycan-driven acidification in a symbiotic conversation Julia A. Schwartzman, Eric Koch, Elizabeth A. C. Heath-Heckman, Lawrence Zhou, Natacha Kremer, Margaret J. McFall-Ngai, and Edward G. Ruby Antiviral immunity of Anopheles gambiae is highly compartmentalized, with distinct roles for RNA interference and gut microbiota Guillaume Carissimo, Emilie Pondeville, Melanie McFarlane, Isabelle Dietrich, Christian Mitri, Emmanuel Bischoff, Christophe Antoniewski, Catherine Bourgouin, Anna-Bella Failloux, Alain Kohl, and Kenneth D. Vernick Direct measurement of oxidative and nitrosative stress dynamics in Salmonella inside macrophages Joris van der Heijden, Else S. Bosman, Lisa A. Reynolds, and B. Brett Finlay Evolution of the H9N2 influenza genotype that facilitated the genesis of the novel H7N9 virus Juan Pu, Shuoguo Wang, Yanbo Yin, Guozhong Zhang, Robert A. Carter, Jinliang Wang, Guanlong Xu, Honglei Sun, Min Wang, Chu Wen, Yandi Wei, Dongdong Wang, Baoli Zhu, Gordon Lemmon, Yuannian Jiao, Susu Duan, Qian Wang, Qian Du, Meng Sun, Jinnan Bao, Yipeng Sun, Jixun Zhao, Hui Zhang, Gang Wu, Jinhua Liu, and Robert G. Webster Neuroscience Giant ankyrin-G stabilizes somatodendritic GABAergic synapses through opposing endocytosis of GABAA receptors  Wei Chou Tseng, Paul M. Jenkins, Masashi Tanaka, Richard Mooney, and Vann Bennett Giant ankyrin-G: A critical innovation in vertebrate evolution of fast and integrated neuronal signaling   Paul M. Jenkins, Namsoo Kim, Steven L. Jones, Wei Chou Tseng, Tatyana M. Svitkina, Henry H. Yin, and Vann Bennett Enhancement of a robust arcuate GABAergic input to gonadotropin-releasing hormone neurons in a model of polycystic ovarian syndrome Aleisha M. Moore, Mel Prescott, Christopher J. Marshall, Siew Hoong Yip, and Rebecca E. Campbell Subunit determination of the conductance of hair-cell mechanotransducer channels  Maryline Beurg, Wei Xiong, Bo Zhao, Ulrich Müller, and Robert Fettiplace Identity of the NMDA receptor coagonist is synapse specific and developmentally regulated in the hippocampus Matildé Le Bail, Magalie Martineau, Silvia Sacchi, Natalia Yatsenko, Inna Radzishevsky, Sandrine Conrod, Karima Ait Ouares, Herman Wolosker, Loredano Pollegioni, Jean-Marie Billard, and Jean-Pierre Mothet Sensory determinants of behavioral dynamics in Drosophila thermotaxis Mason Klein, Bruno Afonso, Ashley J. Vonner, Luis Hernandez-Nunez, Matthew Berck, Christopher J. Tabone, Elizabeth A. Kane, Vincent A. Pieribone, Michael N. Nitabach, Albert Cardona, Marta Zlatic, Simon G. Sprecher, Marc Gershow, Paul A. Garrity, and Aravinthan D. T. Samuel G protein-coupled odorant receptors underlie mechanosensitivity in mammalian olfactory sensory neurons Timothy Connelly, Yiqun Yu, Xavier Grosmaitre, Jue Wang, Lindsey C. Santarelli, Agnes Savigner, Xin Qiao, Zhenshan Wang, Daniel R. Storm, and Minghong Ma Optogenetic activation of cholinergic neurons in the PPT or LDT induces REM sleep  Christa J. Van Dort, Daniel P. Zachs, Jonathan D. Kenny, Shu Zheng, Rebecca R. Goldblum, Noah A. Gelwan, Daniel M. Ramos, Michael A. Nolan, Karen Wang, Feng-Ju Weng, Yingxi Lin, Matthew A. Wilson, and Emery N. Brown Distinct dopamine neurons mediate reward signals for short- and long-term memories  Nobuhiro Yamagata, Toshiharu Ichinose, Yoshinori Aso, Pierre-Yves Plaçais, Anja B. Friedrich, Richard J. Sima, Thomas Preat, Gerald M. Rubin, and Hiromu Tanimoto Physiology Stac adaptor proteins regulate trafficking and function of muscle and neuronal L-type Ca2+ channels Alexander Polster, Stefano Perni, Hicham Bichraoui, and Kurt G. Beam Coral host cells acidify symbiotic algal microenvironment to promote photosynthesis Katie L. Barott, Alexander A. Venn, Sidney O. Perez, Sylvie Tambutté, and Martin Tresguerres Plant Biology Nitric oxide negatively regulates abscisic acid signaling in guard cells by S-nitrosylation of OST1 Pengcheng Wang, Yanyan Du, Yueh-Ju Hou, Yang Zhao, Chuan-Chih Hsu, Feijuan Yuan, Xiaohong Zhu, W. Andy Tao, Chun-Peng Song, and Jian-Kang Zhu Natural diversity in daily rhythms of gene expression contributes to phenotypic variation  Amaury de Montaigu, Antonis Giakountis, Matthew Rubin, Réka Tóth, Frédéric Cremer, Vladislava Sokolova, Aimone Porri, Matthieu Reymond, Cynthia Weinig, and George Coupland Psychological and Cognitive Sciences Extinction learning, which consists of the inhibition of retrieval, can be learned without retrieval Jociane de Carvalho Myskiw, Cristiane Regina Guerino Furini, Bianca Schmidt, Flávia Ferreira, and Ivan Izquierdo Enhancing long-term memory with stimulation tunes visual attention in one trial Robert M. G. Reinhart and Geoffrey F. Woodman Direct coupling of haptic signals between hands  Lucile Dupin, Vincent Hayward, and Mark Wexler Corrections Correction for Wu et al., Structural basis for substrate specificity and catalysis of human histone acetyltransferase 1 Correction for Ferus et al., High-energy chemistry of formamide: A unified mechanism of nucleobase formation Open Access From the Cover Inaugural Article Classic Cozzarelli Prize Winner Front Matter This message was sent to pascal.alter@gmail.com. (....) Or by mail: Customer Service * 425 Broadway St * Redwood City, CA 94063 * U.S.A. Copyright © 2014 by the National Academy of Sciences